miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 11158 1.11 0.000607
Target:  5'- cACACCAUGGGCACGCGCGCCUGCAGCg -3'
miRNA:   3'- -UGUGGUACCCGUGCGCGCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 43028 0.73 0.289808
Target:  5'- aACGCguUGcGCugGCggaccuGCGCCUGCGGCg -3'
miRNA:   3'- -UGUGguACcCGugCG------CGCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 81588 0.73 0.296563
Target:  5'- gACACCGacacGGGCACGCGCaGgCUGCuggaacacgucAGCa -3'
miRNA:   3'- -UGUGGUa---CCCGUGCGCG-CgGACG-----------UCG- -5'
6734 3' -60.4 NC_001875.2 + 130849 0.66 0.683291
Target:  5'- -gGCCGUggcaaaagugGGGC-CGCGUGCCgUGCAuGUu -3'
miRNA:   3'- ugUGGUA----------CCCGuGCGCGCGG-ACGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 21668 0.79 0.110038
Target:  5'- cGCACCAcagccaaUGGGCGUGCGUguagcacaGCCUGCAGCu -3'
miRNA:   3'- -UGUGGU-------ACCCGUGCGCG--------CGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 90658 0.78 0.141611
Target:  5'- uACGCCgugcaaGUGGGC-CGCGCGCaguuugaacgcgcgCUGCAGCg -3'
miRNA:   3'- -UGUGG------UACCCGuGCGCGCG--------------GACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 52111 0.76 0.17031
Target:  5'- cGCGCgCGUGcGGCACGuCGCGCCcaaaGUAGCg -3'
miRNA:   3'- -UGUG-GUAC-CCGUGC-GCGCGGa---CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 37214 0.76 0.183547
Target:  5'- cACAgCGUGGccGCGucCGCGCGCgUGCAGCg -3'
miRNA:   3'- -UGUgGUACC--CGU--GCGCGCGgACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 23933 0.74 0.234393
Target:  5'- gGCgACC-UGGGCaACGUGCGCuCUGCGGg -3'
miRNA:   3'- -UG-UGGuACCCG-UGCGCGCG-GACGUCg -5'
6734 3' -60.4 NC_001875.2 + 79782 0.73 0.283175
Target:  5'- cGCGCCGUGcaaacuGG-ACGCGCGaCUGCGGCu -3'
miRNA:   3'- -UGUGGUAC------CCgUGCGCGCgGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 82651 0.73 0.27027
Target:  5'- uGCAgCGUGGGCG-GCGgGCCgUGguGCa -3'
miRNA:   3'- -UGUgGUACCCGUgCGCgCGG-ACguCG- -5'
6734 3' -60.4 NC_001875.2 + 48681 0.75 0.228818
Target:  5'- aAUACCcgcGGgGCGCGCGCCggGCGGCg -3'
miRNA:   3'- -UGUGGuacCCgUGCGCGCGGa-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 54743 0.84 0.048555
Target:  5'- cGCGCCGUGGGCGCGC-CGCCgggcgaaGCGGCc -3'
miRNA:   3'- -UGUGGUACCCGUGCGcGCGGa------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 41958 0.73 0.27027
Target:  5'- gGCGCC---GGCGCGCGUGCCgGCGGa -3'
miRNA:   3'- -UGUGGuacCCGUGCGCGCGGaCGUCg -5'
6734 3' -60.4 NC_001875.2 + 129696 0.84 0.053193
Target:  5'- cGCGCCGUGGcCGCGCGCagcucggccagcucgGCCUGCAGCu -3'
miRNA:   3'- -UGUGGUACCcGUGCGCG---------------CGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 110449 0.75 0.228818
Target:  5'- aGCACCGUcucggcgacgGGGCAgccCGCGCGCUccGCGGCc -3'
miRNA:   3'- -UGUGGUA----------CCCGU---GCGCGCGGa-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 66204 0.73 0.276662
Target:  5'- cGCGgCGUcGGCGCGCgGUGCCUGCgcGGCg -3'
miRNA:   3'- -UGUgGUAcCCGUGCG-CGCGGACG--UCG- -5'
6734 3' -60.4 NC_001875.2 + 38930 0.73 0.289808
Target:  5'- gGC-CCAUGcGGUggauGCGgucuUGCGCCUGCAGCu -3'
miRNA:   3'- -UGuGGUAC-CCG----UGC----GCGCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 38721 0.81 0.080567
Target:  5'- aGCAggAUGGGCACGcCGCGCCgacGCAGCa -3'
miRNA:   3'- -UGUggUACCCGUGC-GCGCGGa--CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 56524 0.78 0.142698
Target:  5'- aGCGCCGguuugacaacGGGCAUGuCGCGCCUGCGucGCa -3'
miRNA:   3'- -UGUGGUa---------CCCGUGC-GCGCGGACGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.