miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 131681 0.69 0.456777
Target:  5'- -aGCCAcguguuUGGcGC-CGCGUGCCUGCcuuGCa -3'
miRNA:   3'- ugUGGU------ACC-CGuGCGCGCGGACGu--CG- -5'
6734 3' -60.4 NC_001875.2 + 131057 0.67 0.572264
Target:  5'- aACGCCAUGaacGUucCGCGCGCCgccGuCAGCu -3'
miRNA:   3'- -UGUGGUACc--CGu-GCGCGCGGa--C-GUCG- -5'
6734 3' -60.4 NC_001875.2 + 130849 0.66 0.683291
Target:  5'- -gGCCGUggcaaaagugGGGC-CGCGUGCCgUGCAuGUu -3'
miRNA:   3'- ugUGGUA----------CCCGuGCGCGCGG-ACGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 129696 0.84 0.053193
Target:  5'- cGCGCCGUGGcCGCGCGCagcucggccagcucgGCCUGCAGCu -3'
miRNA:   3'- -UGUGGUACCcGUGCGCG---------------CGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 129321 0.7 0.421072
Target:  5'- gGCGCCugGGGCAacUGCgGCGCCU-CGGCa -3'
miRNA:   3'- -UGUGGuaCCCGU--GCG-CGCGGAcGUCG- -5'
6734 3' -60.4 NC_001875.2 + 129056 0.72 0.339652
Target:  5'- uCACCGcGcGCugGCGCGCUUGCucGGCa -3'
miRNA:   3'- uGUGGUaCcCGugCGCGCGGACG--UCG- -5'
6734 3' -60.4 NC_001875.2 + 128957 0.72 0.332166
Target:  5'- cACGCCGuUGGGCA-GCGCGUaagaggcgcGCAGCg -3'
miRNA:   3'- -UGUGGU-ACCCGUgCGCGCGga-------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 128895 0.68 0.513195
Target:  5'- cGCGCCG-GGGCGCGgcuCGCGgCgcagaccuggGCGGCg -3'
miRNA:   3'- -UGUGGUaCCCGUGC---GCGCgGa---------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 128766 0.8 0.104733
Target:  5'- cACGCCGUGGGCGaccccgGCGCGCC-GCuGCg -3'
miRNA:   3'- -UGUGGUACCCGUg-----CGCGCGGaCGuCG- -5'
6734 3' -60.4 NC_001875.2 + 126289 0.72 0.310438
Target:  5'- uCGCCGUGacuGGCaccuuaACGCGCGCCUcaacgGCGGCc -3'
miRNA:   3'- uGUGGUAC---CCG------UGCGCGCGGA-----CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 124806 0.68 0.539511
Target:  5'- uGCACCAgcgugGcGGCgcuaaaggucagauACGCGcCGCCggccaGCAGCa -3'
miRNA:   3'- -UGUGGUa----C-CCG--------------UGCGC-GCGGa----CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 122869 0.7 0.421072
Target:  5'- gACGCCGUGGaCuCGCGCGCCaGUucGGUg -3'
miRNA:   3'- -UGUGGUACCcGuGCGCGCGGaCG--UCG- -5'
6734 3' -60.4 NC_001875.2 + 122698 0.67 0.592349
Target:  5'- uGCGCCGUGGacaccgaaCugGCGCGCgaGUccacGGCg -3'
miRNA:   3'- -UGUGGUACCc-------GugCGCGCGgaCG----UCG- -5'
6734 3' -60.4 NC_001875.2 + 122632 0.71 0.36284
Target:  5'- gGCAUCGcaaaGGuGCuGCGCGCGCC-GCAGCc -3'
miRNA:   3'- -UGUGGUa---CC-CG-UGCGCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 122313 0.66 0.653055
Target:  5'- uACACCGcuccguugGGGCucgccgucgUGCGCGCCgGCcGCg -3'
miRNA:   3'- -UGUGGUa-------CCCGu--------GCGCGCGGaCGuCG- -5'
6734 3' -60.4 NC_001875.2 + 122124 0.69 0.494045
Target:  5'- cACGCUucGGGCGCgGCGCGgCCgGCGcGCa -3'
miRNA:   3'- -UGUGGuaCCCGUG-CGCGC-GGaCGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 121940 0.69 0.475229
Target:  5'- cACAUCuuuGUGGuGCGCGCGgcaGCgUUGCAGCg -3'
miRNA:   3'- -UGUGG---UACC-CGUGCGCg--CG-GACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 120375 0.67 0.582289
Target:  5'- -gGCCAcgaaUGGGUugGCGCGCaucguUGUguucAGCg -3'
miRNA:   3'- ugUGGU----ACCCGugCGCGCGg----ACG----UCG- -5'
6734 3' -60.4 NC_001875.2 + 119806 0.7 0.435154
Target:  5'- uGCGCagcuUGGGCGCguaaaacgcguucaGCGUGCCggucaguUGCAGCa -3'
miRNA:   3'- -UGUGgu--ACCCGUG--------------CGCGCGG-------ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 119216 0.66 0.683291
Target:  5'- -aGCCG-GGGCGC-CGCGCacaUGC-GCa -3'
miRNA:   3'- ugUGGUaCCCGUGcGCGCGg--ACGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.