miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 18840 0.68 0.513195
Target:  5'- cACGCC---GGCGCGCGCGCCguuUGauauGGCa -3'
miRNA:   3'- -UGUGGuacCCGUGCGCGCGG---ACg---UCG- -5'
6734 3' -60.4 NC_001875.2 + 18890 0.66 0.663161
Target:  5'- aACGCCuuuucauauuUGGGCGCGC-UGUUguugUGCGGCa -3'
miRNA:   3'- -UGUGGu---------ACCCGUGCGcGCGG----ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 19115 0.69 0.456777
Target:  5'- -uGCUGUGcGCGCGaCGCGCCUaccacgGCGGCg -3'
miRNA:   3'- ugUGGUACcCGUGC-GCGCGGA------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 19157 0.67 0.592349
Target:  5'- aGCGCguUGcGGCcUGCGCGCaCUGCcGUg -3'
miRNA:   3'- -UGUGguAC-CCGuGCGCGCG-GACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 19276 0.68 0.542464
Target:  5'- cCGCCGUGguaGGCGCGuCGCGCgcaCAGCa -3'
miRNA:   3'- uGUGGUAC---CCGUGC-GCGCGgacGUCG- -5'
6734 3' -60.4 NC_001875.2 + 19804 0.71 0.395426
Target:  5'- cACGCCA-GGGCAuCGUuggggucuacGCG-CUGCAGCg -3'
miRNA:   3'- -UGUGGUaCCCGU-GCG----------CGCgGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 20630 0.66 0.642933
Target:  5'- cACGcCCGUGaGCaacaaaaaacgGCGCGCGCCgccCAGCg -3'
miRNA:   3'- -UGU-GGUACcCG-----------UGCGCGCGGac-GUCG- -5'
6734 3' -60.4 NC_001875.2 + 20805 0.68 0.513195
Target:  5'- gGCGCgcUGGGCgGCGCGCGCCguuuuuuguUGCucacgGGCg -3'
miRNA:   3'- -UGUGguACCCG-UGCGCGCGG---------ACG-----UCG- -5'
6734 3' -60.4 NC_001875.2 + 21238 0.72 0.337394
Target:  5'- aACACCAguUGgcgaagcugguccaGGCGCGCGCGCggcGCGGCu -3'
miRNA:   3'- -UGUGGU--AC--------------CCGUGCGCGCGga-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 21410 0.73 0.296563
Target:  5'- cGCGCC----GCGCGCGCGCCUGgacCAGCu -3'
miRNA:   3'- -UGUGGuaccCGUGCGCGCGGAC---GUCG- -5'
6734 3' -60.4 NC_001875.2 + 21668 0.79 0.110038
Target:  5'- cGCACCAcagccaaUGGGCGUGCGUguagcacaGCCUGCAGCu -3'
miRNA:   3'- -UGUGGU-------ACCCGUGCGCG--------CGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 22832 0.66 0.663161
Target:  5'- gGCACCGUcGGCggcacgacguACGCGUccaGCCuggacaccgugcUGCAGCg -3'
miRNA:   3'- -UGUGGUAcCCG----------UGCGCG---CGG------------ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 23035 0.68 0.562282
Target:  5'- -gGCCGUGuGCGauaGCGaUGCgCUGCAGCa -3'
miRNA:   3'- ugUGGUACcCGUg--CGC-GCG-GACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 23080 0.68 0.532641
Target:  5'- aACACC---GGCAaccCGCGcCGCgUGCAGCu -3'
miRNA:   3'- -UGUGGuacCCGU---GCGC-GCGgACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 23933 0.74 0.234393
Target:  5'- gGCgACC-UGGGCaACGUGCGCuCUGCGGg -3'
miRNA:   3'- -UG-UGGuACCCG-UGCGCGCG-GACGUCg -5'
6734 3' -60.4 NC_001875.2 + 26891 0.69 0.465956
Target:  5'- aAUAUguUGGGCguuACGCGCGCguuCUGCuGGCg -3'
miRNA:   3'- -UGUGguACCCG---UGCGCGCG---GACG-UCG- -5'
6734 3' -60.4 NC_001875.2 + 27187 0.7 0.412412
Target:  5'- aGCACCGUcagGuGGCACGCGCuaggaucgGCCUuGuCGGCg -3'
miRNA:   3'- -UGUGGUA---C-CCGUGCGCG--------CGGA-C-GUCG- -5'
6734 3' -60.4 NC_001875.2 + 28811 0.72 0.347261
Target:  5'- cGCGgCAaacgGGGCACGUGgucaCGCCcGCAGCg -3'
miRNA:   3'- -UGUgGUa---CCCGUGCGC----GCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 29010 0.67 0.582289
Target:  5'- uGC-CCugcGGGCACGUGgugGCgUGCGGCa -3'
miRNA:   3'- -UGuGGua-CCCGUGCGCg--CGgACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 29280 0.67 0.582289
Target:  5'- cGCGCCGgcgGGGCGCggucgugugGCGUGUCgUGC-GCg -3'
miRNA:   3'- -UGUGGUa--CCCGUG---------CGCGCGG-ACGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.