miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 70407 0.66 0.642933
Target:  5'- aGCGgCGacGGCuCGgGCGCCgGCGGCg -3'
miRNA:   3'- -UGUgGUacCCGuGCgCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 76101 0.66 0.642933
Target:  5'- aACGuuAUGGGCGCGCcguaGCGCUccuuuucCAGCg -3'
miRNA:   3'- -UGUggUACCCGUGCG----CGCGGac-----GUCG- -5'
6734 3' -60.4 NC_001875.2 + 31974 0.66 0.640907
Target:  5'- -aACgCGUGuGGCGCGCGUacgGCCgguuugugagcgGCGGCg -3'
miRNA:   3'- ugUG-GUAC-CCGUGCGCG---CGGa-----------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 779 0.66 0.639894
Target:  5'- aACGCa--GGGCGCGCuugacaacGCGCUggugguuaauauagUGCGGCa -3'
miRNA:   3'- -UGUGguaCCCGUGCG--------CGCGG--------------ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 33376 0.66 0.632802
Target:  5'- gGCGCCcgGcGaGCcCGCGCccgcguuuGCCgGCAGCg -3'
miRNA:   3'- -UGUGGuaC-C-CGuGCGCG--------CGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 31011 0.66 0.632802
Target:  5'- cGCugCA--GGC-CGCgGCGUUUGCGGCg -3'
miRNA:   3'- -UGugGUacCCGuGCG-CGCGGACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 114212 0.66 0.632802
Target:  5'- cUAgCGUGGcGUACGCGCaGCCcGCGuGCu -3'
miRNA:   3'- uGUgGUACC-CGUGCGCG-CGGaCGU-CG- -5'
6734 3' -60.4 NC_001875.2 + 37859 0.66 0.629762
Target:  5'- cGCACCAcaaacauuacaaaacGGCGgGcCGCGCCaGCGGCu -3'
miRNA:   3'- -UGUGGUac-------------CCGUgC-GCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 109420 0.67 0.622671
Target:  5'- aACGCCc-GGGCGCgGCGCGUUgGcCGGCc -3'
miRNA:   3'- -UGUGGuaCCCGUG-CGCGCGGaC-GUCG- -5'
6734 3' -60.4 NC_001875.2 + 85482 0.67 0.622671
Target:  5'- cGCGgCGggcgGGGCGagaGCGCCcGCGGCa -3'
miRNA:   3'- -UGUgGUa---CCCGUgcgCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 51482 0.67 0.622671
Target:  5'- gACACCAU-GGCGCGUGCGa--GCuGGCc -3'
miRNA:   3'- -UGUGGUAcCCGUGCGCGCggaCG-UCG- -5'
6734 3' -60.4 NC_001875.2 + 74234 0.67 0.622671
Target:  5'- aACugCAgguuuugcgagGGGCGCGCacaauccaCGCCgaGCAGCg -3'
miRNA:   3'- -UGugGUa----------CCCGUGCGc-------GCGGa-CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 93225 0.67 0.622671
Target:  5'- gGCGuCCuguUGGGCGgagaGCGCGCCcGCAauucgGCg -3'
miRNA:   3'- -UGU-GGu--ACCCGUg---CGCGCGGaCGU-----CG- -5'
6734 3' -60.4 NC_001875.2 + 114435 0.67 0.622671
Target:  5'- -aACCGUuGGCGCGaGCGgCUGCcGCa -3'
miRNA:   3'- ugUGGUAcCCGUGCgCGCgGACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 45865 0.67 0.622671
Target:  5'- -gGCCAUcGGCAgUGCGCGgCgcgcGCGGCg -3'
miRNA:   3'- ugUGGUAcCCGU-GCGCGCgGa---CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 31609 0.67 0.622671
Target:  5'- -uGCCGUGGGCggaccacauGCGCGUGUUUGacgAGUa -3'
miRNA:   3'- ugUGGUACCCG---------UGCGCGCGGACg--UCG- -5'
6734 3' -60.4 NC_001875.2 + 78370 0.67 0.622671
Target:  5'- cCACCAUGGGCuccUGCGgGUaCUGCuuGGUc -3'
miRNA:   3'- uGUGGUACCCGu--GCGCgCG-GACG--UCG- -5'
6734 3' -60.4 NC_001875.2 + 85457 0.67 0.622671
Target:  5'- gACACCGUGucgcuGCACaUGCGCa-GCAGCu -3'
miRNA:   3'- -UGUGGUACc----CGUGcGCGCGgaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 42187 0.67 0.622671
Target:  5'- cGCGCgGuUGGGCGuuucaaauaGCGCGCg-GCGGCa -3'
miRNA:   3'- -UGUGgU-ACCCGUg--------CGCGCGgaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 90403 0.67 0.622671
Target:  5'- gGCGCCu---GUGCGCGCGCa-GCGGCc -3'
miRNA:   3'- -UGUGGuaccCGUGCGCGCGgaCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.