miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6734 3' -60.4 NC_001875.2 + 18890 0.66 0.663161
Target:  5'- aACGCCuuuucauauuUGGGCGCGC-UGUUguugUGCGGCa -3'
miRNA:   3'- -UGUGGu---------ACCCGUGCGcGCGG----ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 36989 0.66 0.663161
Target:  5'- uAUACauuaGUGGcGCGgGCGCGCaaCUGCcGCg -3'
miRNA:   3'- -UGUGg---UACC-CGUgCGCGCG--GACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 31109 0.66 0.663161
Target:  5'- cGCGCgCGUGGGCGCcaugGCGaGaCCugUGCGGCc -3'
miRNA:   3'- -UGUG-GUACCCGUG----CGCgC-GG--ACGUCG- -5'
6734 3' -60.4 NC_001875.2 + 39776 0.66 0.660132
Target:  5'- cGCGCCAUugucGGCAaacgaagcguuguuCGCGgGCUUGCuGCu -3'
miRNA:   3'- -UGUGGUAc---CCGU--------------GCGCgCGGACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 34654 0.66 0.653055
Target:  5'- cCGCCGUGGGCAaGUGCaCCUacacgauuggGCuGCg -3'
miRNA:   3'- uGUGGUACCCGUgCGCGcGGA----------CGuCG- -5'
6734 3' -60.4 NC_001875.2 + 87981 0.66 0.653055
Target:  5'- aACGCCcgc-GUACGCGaCGCCcgcGCAGCa -3'
miRNA:   3'- -UGUGGuaccCGUGCGC-GCGGa--CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 122313 0.66 0.653055
Target:  5'- uACACCGcuccguugGGGCucgccgucgUGCGCGCCgGCcGCg -3'
miRNA:   3'- -UGUGGUa-------CCCGu--------GCGCGCGGaCGuCG- -5'
6734 3' -60.4 NC_001875.2 + 3698 0.66 0.653055
Target:  5'- cGCGCCAcGGcGCcggugACGUGCGCCaaaUGC-GCa -3'
miRNA:   3'- -UGUGGUaCC-CG-----UGCGCGCGG---ACGuCG- -5'
6734 3' -60.4 NC_001875.2 + 30262 0.66 0.653055
Target:  5'- aGCACCGUcacGGcGUACaGCGCGCa--CAGCa -3'
miRNA:   3'- -UGUGGUA---CC-CGUG-CGCGCGgacGUCG- -5'
6734 3' -60.4 NC_001875.2 + 6967 0.66 0.653055
Target:  5'- uCGCCAc-GGCGCGC-UGCUUGaCAGCg -3'
miRNA:   3'- uGUGGUacCCGUGCGcGCGGAC-GUCG- -5'
6734 3' -60.4 NC_001875.2 + 37039 0.66 0.653055
Target:  5'- -gGCCGUGcacggcgcGuGCACGCGCGCggacGCGGCc -3'
miRNA:   3'- ugUGGUAC--------C-CGUGCGCGCGga--CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 37268 0.66 0.653055
Target:  5'- aACGCCGgcgcGGCGC-CGCGCCcgcacacccacGCGGCg -3'
miRNA:   3'- -UGUGGUac--CCGUGcGCGCGGa----------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 109794 0.66 0.653055
Target:  5'- gACGCCGcguUGGGCA-GCGCGUUUcGCAu- -3'
miRNA:   3'- -UGUGGU---ACCCGUgCGCGCGGA-CGUcg -5'
6734 3' -60.4 NC_001875.2 + 35563 0.66 0.652044
Target:  5'- cGCGCUugucGGCgucgcucGCGCGCGCCacggacaGCAGCg -3'
miRNA:   3'- -UGUGGuac-CCG-------UGCGCGCGGa------CGUCG- -5'
6734 3' -60.4 NC_001875.2 + 17054 0.66 0.645971
Target:  5'- cGCGCCGucgucgaUGGGCguaaagucgauagaaGCGguCGCGCUgGCGGCg -3'
miRNA:   3'- -UGUGGU-------ACCCG---------------UGC--GCGCGGaCGUCG- -5'
6734 3' -60.4 NC_001875.2 + 76101 0.66 0.642933
Target:  5'- aACGuuAUGGGCGCGCcguaGCGCUccuuuucCAGCg -3'
miRNA:   3'- -UGUggUACCCGUGCG----CGCGGac-----GUCG- -5'
6734 3' -60.4 NC_001875.2 + 20630 0.66 0.642933
Target:  5'- cACGcCCGUGaGCaacaaaaaacgGCGCGCGCCgccCAGCg -3'
miRNA:   3'- -UGU-GGUACcCG-----------UGCGCGCGGac-GUCG- -5'
6734 3' -60.4 NC_001875.2 + 56456 0.66 0.642933
Target:  5'- -gGCCGguggcgGGGUcCGCGCGCgUGUuggucAGCg -3'
miRNA:   3'- ugUGGUa-----CCCGuGCGCGCGgACG-----UCG- -5'
6734 3' -60.4 NC_001875.2 + 37750 0.66 0.642933
Target:  5'- cCGCCGUGcggccggccgcGGCGCuCGCGCCgGC-GCa -3'
miRNA:   3'- uGUGGUAC-----------CCGUGcGCGCGGaCGuCG- -5'
6734 3' -60.4 NC_001875.2 + 56247 0.66 0.642933
Target:  5'- cACGCCG-----GCGCGCGgCUGCAGUa -3'
miRNA:   3'- -UGUGGUacccgUGCGCGCgGACGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.