miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 3' -57.2 NC_001875.2 + 76138 0.66 0.826199
Target:  5'- gCGCgGCCGUagaggcccGCGUAAAcgGCCUGUUCa -3'
miRNA:   3'- -GCG-CGGCG--------CGCGUUUugUGGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 88250 0.66 0.826199
Target:  5'- gCGCGCCGC-CGCugc-CGCCguaCUCGu -3'
miRNA:   3'- -GCGCGGCGcGCGuuuuGUGGac-GAGC- -5'
6735 3' -57.2 NC_001875.2 + 96036 0.66 0.826199
Target:  5'- uGCGUgGCGCGCGAGuuuaaCUGUUUGc -3'
miRNA:   3'- gCGCGgCGCGCGUUUugug-GACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 19972 0.66 0.82365
Target:  5'- gGCGCCucgccguugcugacGUGCGUGgccAGACACCUggccgGCUCGc -3'
miRNA:   3'- gCGCGG--------------CGCGCGU---UUUGUGGA-----CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 49931 0.66 0.817641
Target:  5'- --aGCCGCGCGCGcuaauCAgCUGgUCGu -3'
miRNA:   3'- gcgCGGCGCGCGUuuu--GUgGACgAGC- -5'
6735 3' -57.2 NC_001875.2 + 95990 0.66 0.817641
Target:  5'- gCGCGCCGUGCaguacccuGCAAaaggccaccaGACGCCcaUGCUg- -3'
miRNA:   3'- -GCGCGGCGCG--------CGUU----------UUGUGG--ACGAgc -5'
6735 3' -57.2 NC_001875.2 + 40186 0.66 0.817641
Target:  5'- gCGUGCCGUacGCGUAcggccAGCugCUGCgCGg -3'
miRNA:   3'- -GCGCGGCG--CGCGUu----UUGugGACGaGC- -5'
6735 3' -57.2 NC_001875.2 + 796 0.66 0.817641
Target:  5'- uGCGCgGCaauuguuuuGCGCAGAAacaGCUUGCUgGu -3'
miRNA:   3'- gCGCGgCG---------CGCGUUUUg--UGGACGAgC- -5'
6735 3' -57.2 NC_001875.2 + 13865 0.66 0.817641
Target:  5'- uGCG-CGCGCGCAAcAgGCCauuuuggcGCUCGc -3'
miRNA:   3'- gCGCgGCGCGCGUUuUgUGGa-------CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 31684 0.66 0.817641
Target:  5'- gCGUGCCG-GCGUGGAcCGCC-GCUUGc -3'
miRNA:   3'- -GCGCGGCgCGCGUUUuGUGGaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 44883 0.66 0.817641
Target:  5'- uGCGCUuuGCGcCGCuuGGACGCUggcGCUCGc -3'
miRNA:   3'- gCGCGG--CGC-GCGu-UUUGUGGa--CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 42051 0.66 0.817641
Target:  5'- cCGCGCUGCguucGCGCAcguGCACgaGCgCGu -3'
miRNA:   3'- -GCGCGGCG----CGCGUuu-UGUGgaCGaGC- -5'
6735 3' -57.2 NC_001875.2 + 128183 0.66 0.817641
Target:  5'- gCGCGCaaGCGCGCAGcacacACGCCagcgGCUUu -3'
miRNA:   3'- -GCGCGg-CGCGCGUUu----UGUGGa---CGAGc -5'
6735 3' -57.2 NC_001875.2 + 9053 0.66 0.817641
Target:  5'- cCGCGCCGguuucCGCGCcGGuuuccgccaacuGCGCCUGUggCGa -3'
miRNA:   3'- -GCGCGGC-----GCGCGuUU------------UGUGGACGa-GC- -5'
6735 3' -57.2 NC_001875.2 + 98456 0.66 0.817641
Target:  5'- -aUGCUGgGCGaCGAGACGgCCUGCUUc -3'
miRNA:   3'- gcGCGGCgCGC-GUUUUGU-GGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 122541 0.66 0.817641
Target:  5'- uGCGuCCgGCGCGCAGuGCACaUGUauaUCGg -3'
miRNA:   3'- gCGC-GG-CGCGCGUUuUGUGgACG---AGC- -5'
6735 3' -57.2 NC_001875.2 + 92515 0.66 0.817641
Target:  5'- uGCGCCugcaGCGCGCGc-ACGCCgccgGCaCGg -3'
miRNA:   3'- gCGCGG----CGCGCGUuuUGUGGa---CGaGC- -5'
6735 3' -57.2 NC_001875.2 + 65600 0.66 0.817641
Target:  5'- gGCGgCGCaGUGCGAAACGCUcacccgguuugUGUUCa -3'
miRNA:   3'- gCGCgGCG-CGCGUUUUGUGG-----------ACGAGc -5'
6735 3' -57.2 NC_001875.2 + 101546 0.66 0.817641
Target:  5'- aCGCGgccacggaCGCGuUGCGAAACAUCUGCa-- -3'
miRNA:   3'- -GCGCg-------GCGC-GCGUUUUGUGGACGagc -5'
6735 3' -57.2 NC_001875.2 + 74235 0.66 0.817641
Target:  5'- uCGCGCCGUGCcuGCccuACACCacGCUUc -3'
miRNA:   3'- -GCGCGGCGCG--CGuuuUGUGGa-CGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.