miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 3' -57.2 NC_001875.2 + 38178 0.66 0.83458
Target:  5'- aGCGCC-CGaCGCAGGucgucaACgUGCUCGu -3'
miRNA:   3'- gCGCGGcGC-GCGUUUug----UGgACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 82260 0.66 0.83458
Target:  5'- aGCGCuCGUcgGCGC---GCAgCUGCUUGg -3'
miRNA:   3'- gCGCG-GCG--CGCGuuuUGUgGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 34355 0.66 0.83458
Target:  5'- gCGCGCgGCGCaaGAGACGCaguUGCUg- -3'
miRNA:   3'- -GCGCGgCGCGcgUUUUGUGg--ACGAgc -5'
6735 3' -57.2 NC_001875.2 + 122074 0.66 0.83458
Target:  5'- uGUGCCGCGUGCGcuuggccucgGAACGgCgguggacGCUCa -3'
miRNA:   3'- gCGCGGCGCGCGU----------UUUGUgGa------CGAGc -5'
6735 3' -57.2 NC_001875.2 + 53892 0.66 0.83458
Target:  5'- gGcCGCCGCgGCGCAAAuaauugugggcGCGCCguUGCgggCGc -3'
miRNA:   3'- gC-GCGGCG-CGCGUUU-----------UGUGG--ACGa--GC- -5'
6735 3' -57.2 NC_001875.2 + 83591 0.66 0.83458
Target:  5'- gGaCGCCGCGCGCcuuAuuCACggUGUUCGg -3'
miRNA:   3'- gC-GCGGCGCGCGu--UuuGUGg-ACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 84308 0.66 0.83458
Target:  5'- gCGCGCCuaGUaGCG--GCGCCUGCg-- -3'
miRNA:   3'- -GCGCGGcgCG-CGUuuUGUGGACGagc -5'
6735 3' -57.2 NC_001875.2 + 37354 0.66 0.826199
Target:  5'- gCGCgGCCGCGCGCucgugcGAACGCgcgcgccgCUGCa-- -3'
miRNA:   3'- -GCG-CGGCGCGCGu-----UUUGUG--------GACGagc -5'
6735 3' -57.2 NC_001875.2 + 57343 0.66 0.826199
Target:  5'- aGCGCUGCGCGCGGcgaaACC-GCa-- -3'
miRNA:   3'- gCGCGGCGCGCGUUuug-UGGaCGagc -5'
6735 3' -57.2 NC_001875.2 + 36658 0.66 0.826199
Target:  5'- cCGCGUCGUGCGC---GC-UgaGCUCGg -3'
miRNA:   3'- -GCGCGGCGCGCGuuuUGuGgaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 9898 0.66 0.826199
Target:  5'- aCGCuGCCGCGCGCAccacaaagauGugGCCgcaaugGCUa- -3'
miRNA:   3'- -GCG-CGGCGCGCGUu---------UugUGGa-----CGAgc -5'
6735 3' -57.2 NC_001875.2 + 76138 0.66 0.826199
Target:  5'- gCGCgGCCGUagaggcccGCGUAAAcgGCCUGUUCa -3'
miRNA:   3'- -GCG-CGGCG--------CGCGUUUugUGGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 30938 0.66 0.826199
Target:  5'- aGCGucuCCGCGCGCugcGGCGCCcggaccgGCUUa -3'
miRNA:   3'- gCGC---GGCGCGCGuu-UUGUGGa------CGAGc -5'
6735 3' -57.2 NC_001875.2 + 80619 0.66 0.826199
Target:  5'- gGUGg-GCGCGCGGAACGCgC-GCUCGa -3'
miRNA:   3'- gCGCggCGCGCGUUUUGUG-GaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 88250 0.66 0.826199
Target:  5'- gCGCGCCGC-CGCugc-CGCCguaCUCGu -3'
miRNA:   3'- -GCGCGGCGcGCGuuuuGUGGac-GAGC- -5'
6735 3' -57.2 NC_001875.2 + 73974 0.66 0.826199
Target:  5'- uCGCGCaaaGCGUGCuc-AUACC-GCUCc -3'
miRNA:   3'- -GCGCGg--CGCGCGuuuUGUGGaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 96036 0.66 0.826199
Target:  5'- uGCGUgGCGCGCGAGuuuaaCUGUUUGc -3'
miRNA:   3'- gCGCGgCGCGCGUUUugug-GACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 47597 0.66 0.826199
Target:  5'- uCGuCGCCgGCGCGCGuu-UGCC-GCUCa -3'
miRNA:   3'- -GC-GCGG-CGCGCGUuuuGUGGaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 69718 0.66 0.826199
Target:  5'- gCGCGUCGCGCuaacguuuGCAcgGAAUcgggcggcgACCUGCUgCGa -3'
miRNA:   3'- -GCGCGGCGCG--------CGU--UUUG---------UGGACGA-GC- -5'
6735 3' -57.2 NC_001875.2 + 131183 0.66 0.826199
Target:  5'- aCGUGCCGUGCcCGG---ACCUGUUUGa -3'
miRNA:   3'- -GCGCGGCGCGcGUUuugUGGACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.