miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 3' -57.2 NC_001875.2 + 112114 0.75 0.360445
Target:  5'- gGCGCCGUuuGCGAAACGCgugcgcuuuuagCUGCUCGu -3'
miRNA:   3'- gCGCGGCGcgCGUUUUGUG------------GACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 19264 0.74 0.375793
Target:  5'- gCGCGUCGCGCGCAcAGCAacacggcCCUG-UCGg -3'
miRNA:   3'- -GCGCGGCGCGCGUuUUGU-------GGACgAGC- -5'
6735 3' -57.2 NC_001875.2 + 129066 0.74 0.376613
Target:  5'- uCGUGCaaauucacCGCGCGCuggcGCGCUUGCUCGg -3'
miRNA:   3'- -GCGCG--------GCGCGCGuuu-UGUGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 45704 0.74 0.384879
Target:  5'- -uCGCCGCGCGCGccGCGCaCUGC-CGa -3'
miRNA:   3'- gcGCGGCGCGCGUuuUGUG-GACGaGC- -5'
6735 3' -57.2 NC_001875.2 + 43027 0.74 0.384879
Target:  5'- aCGCGuuGCGCugGCGGAccuGCGCCUGCggCGc -3'
miRNA:   3'- -GCGCggCGCG--CGUUU---UGUGGACGa-GC- -5'
6735 3' -57.2 NC_001875.2 + 107992 0.74 0.401766
Target:  5'- gCGCGUCGCaagGCGCAccGGGCGCggGCUCGg -3'
miRNA:   3'- -GCGCGGCG---CGCGU--UUUGUGgaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 85441 0.73 0.419116
Target:  5'- cCGCGCCGCccGCGCAA---ACCgUGUUCGg -3'
miRNA:   3'- -GCGCGGCG--CGCGUUuugUGG-ACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 47685 0.73 0.42796
Target:  5'- gCGCGCCGCGCGUuucucaacgcGGGGCaagugcacgacuGCCUGCUg- -3'
miRNA:   3'- -GCGCGGCGCGCG----------UUUUG------------UGGACGAgc -5'
6735 3' -57.2 NC_001875.2 + 113717 0.73 0.436913
Target:  5'- gCGCGCCGUGCGCGAccGCGCC-GUUg- -3'
miRNA:   3'- -GCGCGGCGCGCGUUu-UGUGGaCGAgc -5'
6735 3' -57.2 NC_001875.2 + 10686 0.73 0.436913
Target:  5'- gGCGCUGC-CGCAAcggcugGACGCCccGCUCGa -3'
miRNA:   3'- gCGCGGCGcGCGUU------UUGUGGa-CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 74965 0.73 0.436913
Target:  5'- aCGCGCCGCuggGCGCGucguACuCCaGCUCGa -3'
miRNA:   3'- -GCGCGGCG---CGCGUuu--UGuGGaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 66063 0.73 0.436913
Target:  5'- cCGaCGCCGCGCGCGugcucgcccAGcCGCCgGCUCa -3'
miRNA:   3'- -GC-GCGGCGCGCGU---------UUuGUGGaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 98946 0.73 0.445974
Target:  5'- cCGCGCCGCGCGgAuAGCGuuCCgcgcgGCUCc -3'
miRNA:   3'- -GCGCGGCGCGCgUuUUGU--GGa----CGAGc -5'
6735 3' -57.2 NC_001875.2 + 71945 0.73 0.445974
Target:  5'- gCGCGCucCGCGCGCAGccuguCGCCgcgaaGCUCGu -3'
miRNA:   3'- -GCGCG--GCGCGCGUUuu---GUGGa----CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 110066 0.73 0.445974
Target:  5'- cCGUGUCGCGCGCAGAG-ACgCUGCgCGu -3'
miRNA:   3'- -GCGCGGCGCGCGUUUUgUG-GACGaGC- -5'
6735 3' -57.2 NC_001875.2 + 13533 0.73 0.445974
Target:  5'- gGUGCCGUGCGUAGAaacggugcGCACCaGCUUc -3'
miRNA:   3'- gCGCGGCGCGCGUUU--------UGUGGaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 32799 0.73 0.455138
Target:  5'- gGCGCCGCGCcgGCAAGcucggcgaacgGCGCC-GCUUGc -3'
miRNA:   3'- gCGCGGCGCG--CGUUU-----------UGUGGaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 10401 0.73 0.455138
Target:  5'- cCGCGCCGUgGCGCG--GCACCcGCUg- -3'
miRNA:   3'- -GCGCGGCG-CGCGUuuUGUGGaCGAgc -5'
6735 3' -57.2 NC_001875.2 + 113546 0.73 0.455138
Target:  5'- cCGCGUgGCGCGCGAAucgcGCGCC-GCUg- -3'
miRNA:   3'- -GCGCGgCGCGCGUUU----UGUGGaCGAgc -5'
6735 3' -57.2 NC_001875.2 + 66177 0.73 0.455138
Target:  5'- gGCGCCaaGCGCuu-GCAgCUGCUCu -3'
miRNA:   3'- gCGCGGcgCGCGuuuUGUgGACGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.