miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 3' -57.2 NC_001875.2 + 12076 1.08 0.002247
Target:  5'- gCGCGCCGCGCGCAAAACACCUGCUCGc -3'
miRNA:   3'- -GCGCGGCGCGCGUUUUGUGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 21411 0.8 0.171799
Target:  5'- cCGCGCCGCGCGC---GCGCCUGgaCc -3'
miRNA:   3'- -GCGCGGCGCGCGuuuUGUGGACgaGc -5'
6735 3' -57.2 NC_001875.2 + 45596 0.79 0.199218
Target:  5'- aGCGCCGaguucgaCGCGCAAAACaACCUGCgCGg -3'
miRNA:   3'- gCGCGGC-------GCGCGUUUUG-UGGACGaGC- -5'
6735 3' -57.2 NC_001875.2 + 85402 0.78 0.237189
Target:  5'- cCGCGCCGaGCGCGGAAC-CCgcGCUCGu -3'
miRNA:   3'- -GCGCGGCgCGCGUUUUGuGGa-CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 30962 0.77 0.254977
Target:  5'- gGCGCCcacGCGCGCGcuGCGCCUcgcGCUCa -3'
miRNA:   3'- gCGCGG---CGCGCGUuuUGUGGA---CGAGc -5'
6735 3' -57.2 NC_001875.2 + 130873 0.77 0.254977
Target:  5'- gCGuCGCCGCGUGCaAGAACGgUUGCUCa -3'
miRNA:   3'- -GC-GCGGCGCGCG-UUUUGUgGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 10597 0.77 0.267434
Target:  5'- cCGCGCCGCGU-CAAAGCugCUGCg-- -3'
miRNA:   3'- -GCGCGGCGCGcGUUUUGugGACGagc -5'
6735 3' -57.2 NC_001875.2 + 41851 0.76 0.287034
Target:  5'- cCGCGCCGCgGCgGCGAGcuGCAacaaCUGCUCGu -3'
miRNA:   3'- -GCGCGGCG-CG-CGUUU--UGUg---GACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 37204 0.76 0.293814
Target:  5'- cCGCGuCCGCGCGCGugcAGCGCCgUGCaCGg -3'
miRNA:   3'- -GCGC-GGCGCGCGUu--UUGUGG-ACGaGC- -5'
6735 3' -57.2 NC_001875.2 + 117819 0.76 0.307748
Target:  5'- gGgGCCGUGCGCAAAGCGCCuacgUGaCUUGu -3'
miRNA:   3'- gCgCGGCGCGCGUUUUGUGG----AC-GAGC- -5'
6735 3' -57.2 NC_001875.2 + 117771 0.76 0.307748
Target:  5'- gGgGCCGUGCGCAAAGCGCCuacgUGaCUUGu -3'
miRNA:   3'- gCgCGGCGCGCGUUUUGUGG----AC-GAGC- -5'
6735 3' -57.2 NC_001875.2 + 81355 0.76 0.307748
Target:  5'- gGUGCCGCGCGCAc-GCGCCgGCcgCGu -3'
miRNA:   3'- gCGCGGCGCGCGUuuUGUGGaCGa-GC- -5'
6735 3' -57.2 NC_001875.2 + 32136 0.76 0.314902
Target:  5'- aGCGCCGCauaGCGCucaacggcggcgAAGACGCgCUGCUCa -3'
miRNA:   3'- gCGCGGCG---CGCG------------UUUUGUG-GACGAGc -5'
6735 3' -57.2 NC_001875.2 + 92672 0.75 0.329585
Target:  5'- aCGCGCCGgGCGCGcacGAGCGCCcGUUUu -3'
miRNA:   3'- -GCGCGGCgCGCGU---UUUGUGGaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 126483 0.75 0.329585
Target:  5'- gGCGCaCGCGCGCAGuuuACGCCgGC-CGc -3'
miRNA:   3'- gCGCG-GCGCGCGUUu--UGUGGaCGaGC- -5'
6735 3' -57.2 NC_001875.2 + 29847 0.75 0.337114
Target:  5'- cCGcCGCCGCGCacgccgcaauGCAcAACGCCUGCgUCGc -3'
miRNA:   3'- -GC-GCGGCGCG----------CGUuUUGUGGACG-AGC- -5'
6735 3' -57.2 NC_001875.2 + 129692 0.75 0.337114
Target:  5'- cCGUgGCCGCGCGCAGcuCGgCCaGCUCGg -3'
miRNA:   3'- -GCG-CGGCGCGCGUUuuGU-GGaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 52702 0.75 0.352544
Target:  5'- gCGCGCgUGCGCGCAuacuGGCGCgUGCUUu -3'
miRNA:   3'- -GCGCG-GCGCGCGUu---UUGUGgACGAGc -5'
6735 3' -57.2 NC_001875.2 + 100195 0.75 0.352544
Target:  5'- gCGCGCCGuUGUGCGAca-ACUUGCUCGu -3'
miRNA:   3'- -GCGCGGC-GCGCGUUuugUGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 112114 0.75 0.360445
Target:  5'- gGCGCCGUuuGCGAAACGCgugcgcuuuuagCUGCUCGu -3'
miRNA:   3'- gCGCGGCGcgCGUUUUGUG------------GACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.