miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 3' -57.2 NC_001875.2 + 796 0.66 0.817641
Target:  5'- uGCGCgGCaauuguuuuGCGCAGAAacaGCUUGCUgGu -3'
miRNA:   3'- gCGCGgCG---------CGCGUUUUg--UGGACGAgC- -5'
6735 3' -57.2 NC_001875.2 + 1175 0.66 0.841965
Target:  5'- gGCGUCGuCGCgGCAcuuugccacgcuGAaccgcauGCGCCUGCUCc -3'
miRNA:   3'- gCGCGGC-GCG-CGU------------UU-------UGUGGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 2557 0.66 0.815041
Target:  5'- gCGCGUCGgGCGCAaacucuuuuaccuuAAACACgaGCg-- -3'
miRNA:   3'- -GCGCGGCgCGCGU--------------UUUGUGgaCGagc -5'
6735 3' -57.2 NC_001875.2 + 2693 0.68 0.743818
Target:  5'- gGCGCCuCG-GCAGAcuccagcauCACCUGCUCc -3'
miRNA:   3'- gCGCGGcGCgCGUUUu--------GUGGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 3094 0.69 0.673925
Target:  5'- gCGUGCaCGCGC-CGGGGCGCg-GCUCGc -3'
miRNA:   3'- -GCGCG-GCGCGcGUUUUGUGgaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 3554 0.66 0.842776
Target:  5'- gGCGCCGUgGCGCGucucAAAUACUUGUcauacauuUCGc -3'
miRNA:   3'- gCGCGGCG-CGCGU----UUUGUGGACG--------AGC- -5'
6735 3' -57.2 NC_001875.2 + 4472 0.69 0.693191
Target:  5'- aGCGCCGUccGCGCAugcuuucAGGCACacguugcguCUGCUCc -3'
miRNA:   3'- gCGCGGCG--CGCGU-------UUUGUG---------GACGAGc -5'
6735 3' -57.2 NC_001875.2 + 4957 0.66 0.815041
Target:  5'- uGCGCCGCcucgGUcuccaccauuaacuGCAAAGCGCCUcGCUg- -3'
miRNA:   3'- gCGCGGCG----CG--------------CGUUUUGUGGA-CGAgc -5'
6735 3' -57.2 NC_001875.2 + 5301 0.68 0.757322
Target:  5'- cCGCGcCCgacgaccacuccauuGCGCGC----UACCUGCUCGc -3'
miRNA:   3'- -GCGC-GG---------------CGCGCGuuuuGUGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 5589 0.66 0.808915
Target:  5'- gCGUGUCGCGuCGCAAcaGAUGCgUGCaCGg -3'
miRNA:   3'- -GCGCGGCGC-GCGUU--UUGUGgACGaGC- -5'
6735 3' -57.2 NC_001875.2 + 5846 0.68 0.714267
Target:  5'- aCGCGcCCGCGUaGCAGuGCACCaGCa-- -3'
miRNA:   3'- -GCGC-GGCGCG-CGUUuUGUGGaCGagc -5'
6735 3' -57.2 NC_001875.2 + 5935 0.7 0.622788
Target:  5'- aGCGCCGCGCaGguGGGCGCg-GcCUCGc -3'
miRNA:   3'- gCGCGGCGCG-CguUUUGUGgaC-GAGC- -5'
6735 3' -57.2 NC_001875.2 + 6614 0.66 0.842776
Target:  5'- cCGCGCCGCaCGCGGugUACUcgUGCcagCGa -3'
miRNA:   3'- -GCGCGGCGcGCGUUuuGUGG--ACGa--GC- -5'
6735 3' -57.2 NC_001875.2 + 6955 0.72 0.473765
Target:  5'- uGCGCCGCGacauCGCcacGGCGCgCUGCUUGa -3'
miRNA:   3'- gCGCGGCGC----GCGuu-UUGUG-GACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 7039 0.7 0.632009
Target:  5'- aGCGCCGCcacgcugGUGCAAGACAuaauCCgcgcGCUCa -3'
miRNA:   3'- gCGCGGCG-------CGCGUUUUGU----GGa---CGAGc -5'
6735 3' -57.2 NC_001875.2 + 9053 0.66 0.817641
Target:  5'- cCGCGCCGguuucCGCGCcGGuuuccgccaacuGCGCCUGUggCGa -3'
miRNA:   3'- -GCGCGGC-----GCGCGuUU------------UGUGGACGa-GC- -5'
6735 3' -57.2 NC_001875.2 + 9642 0.71 0.55168
Target:  5'- gCGCGCCGUGCGUGuuuCGCgaGCUUu -3'
miRNA:   3'- -GCGCGGCGCGCGUuuuGUGgaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 9721 0.7 0.581953
Target:  5'- cCGCGCCGCGCccgaaGCGugGCACgUGUUg- -3'
miRNA:   3'- -GCGCGGCGCG-----CGUuuUGUGgACGAgc -5'
6735 3' -57.2 NC_001875.2 + 9898 0.66 0.826199
Target:  5'- aCGCuGCCGCGCGCAccacaaagauGugGCCgcaaugGCUa- -3'
miRNA:   3'- -GCG-CGGCGCGCGUu---------UugUGGa-----CGAgc -5'
6735 3' -57.2 NC_001875.2 + 10025 0.66 0.850781
Target:  5'- aCGUGaCCGUGauCAAGccACAgCUGCUCGa -3'
miRNA:   3'- -GCGC-GGCGCgcGUUU--UGUgGACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.