miRNA display CGI


Results 1 - 20 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 3' -57.2 NC_001875.2 + 796 0.66 0.817641
Target:  5'- uGCGCgGCaauuguuuuGCGCAGAAacaGCUUGCUgGu -3'
miRNA:   3'- gCGCGgCG---------CGCGUUUUg--UGGACGAgC- -5'
6735 3' -57.2 NC_001875.2 + 36658 0.66 0.826199
Target:  5'- cCGCGUCGUGCGC---GC-UgaGCUCGg -3'
miRNA:   3'- -GCGCGGCGCGCGuuuUGuGgaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 69718 0.66 0.826199
Target:  5'- gCGCGUCGCGCuaacguuuGCAcgGAAUcgggcggcgACCUGCUgCGa -3'
miRNA:   3'- -GCGCGGCGCG--------CGU--UUUG---------UGGACGA-GC- -5'
6735 3' -57.2 NC_001875.2 + 74235 0.66 0.817641
Target:  5'- uCGCGCCGUGCcuGCccuACACCacGCUUc -3'
miRNA:   3'- -GCGCGGCGCG--CGuuuUGUGGa-CGAGc -5'
6735 3' -57.2 NC_001875.2 + 62759 0.66 0.850781
Target:  5'- cCGCGCCGUugaacGCGCAGGgguGCGuuUGCa-- -3'
miRNA:   3'- -GCGCGGCG-----CGCGUUU---UGUggACGagc -5'
6735 3' -57.2 NC_001875.2 + 31684 0.66 0.817641
Target:  5'- gCGUGCCG-GCGUGGAcCGCC-GCUUGc -3'
miRNA:   3'- -GCGCGGCgCGCGUUUuGUGGaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 49931 0.66 0.817641
Target:  5'- --aGCCGCGCGCGcuaauCAgCUGgUCGu -3'
miRNA:   3'- gcgCGGCGCGCGUuuu--GUgGACgAGC- -5'
6735 3' -57.2 NC_001875.2 + 95990 0.66 0.817641
Target:  5'- gCGCGCCGUGCaguacccuGCAAaaggccaccaGACGCCcaUGCUg- -3'
miRNA:   3'- -GCGCGGCGCG--------CGUU----------UUGUGG--ACGAgc -5'
6735 3' -57.2 NC_001875.2 + 42051 0.66 0.817641
Target:  5'- cCGCGCUGCguucGCGCAcguGCACgaGCgCGu -3'
miRNA:   3'- -GCGCGGCG----CGCGUuu-UGUGgaCGaGC- -5'
6735 3' -57.2 NC_001875.2 + 76795 0.66 0.808915
Target:  5'- aCGCGUCGUGCGaCAAGcuggcguguuuCGCCgaGCUCa -3'
miRNA:   3'- -GCGCGGCGCGC-GUUUu----------GUGGa-CGAGc -5'
6735 3' -57.2 NC_001875.2 + 42387 0.66 0.808915
Target:  5'- uCGacaGUCuCGCuCAGAGCACUUGCUCGc -3'
miRNA:   3'- -GCg--CGGcGCGcGUUUUGUGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 37354 0.66 0.826199
Target:  5'- gCGCgGCCGCGCGCucgugcGAACGCgcgcgccgCUGCa-- -3'
miRNA:   3'- -GCG-CGGCGCGCGu-----UUUGUG--------GACGagc -5'
6735 3' -57.2 NC_001875.2 + 2557 0.66 0.815041
Target:  5'- gCGCGUCGgGCGCAaacucuuuuaccuuAAACACgaGCg-- -3'
miRNA:   3'- -GCGCGGCgCGCGU--------------UUUGUGgaCGagc -5'
6735 3' -57.2 NC_001875.2 + 13865 0.66 0.817641
Target:  5'- uGCG-CGCGCGCAAcAgGCCauuuuggcGCUCGc -3'
miRNA:   3'- gCGCgGCGCGCGUUuUgUGGa-------CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 84783 0.66 0.808915
Target:  5'- uCGCuGCCGCuCGCAAcguACugCUGCg-- -3'
miRNA:   3'- -GCG-CGGCGcGCGUUu--UGugGACGagc -5'
6735 3' -57.2 NC_001875.2 + 68712 0.66 0.806265
Target:  5'- gCGCcgGCCGCGCGCccggccgcuaucccAuggacGAGCGgUUGCUCGa -3'
miRNA:   3'- -GCG--CGGCGCGCG--------------U-----UUUGUgGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 116769 0.66 0.808033
Target:  5'- gGCGCUGCGCGUgcaauGAGuugaugccgggguACACCUGgUgCGa -3'
miRNA:   3'- gCGCGGCGCGCG-----UUU-------------UGUGGACgA-GC- -5'
6735 3' -57.2 NC_001875.2 + 80619 0.66 0.826199
Target:  5'- gGUGg-GCGCGCGGAACGCgC-GCUCGa -3'
miRNA:   3'- gCGCggCGCGCGUUUUGUG-GaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 57343 0.66 0.826199
Target:  5'- aGCGCUGCGCGCGGcgaaACC-GCa-- -3'
miRNA:   3'- gCGCGGCGCGCGUUuug-UGGaCGagc -5'
6735 3' -57.2 NC_001875.2 + 44883 0.66 0.817641
Target:  5'- uGCGCUuuGCGcCGCuuGGACGCUggcGCUCGc -3'
miRNA:   3'- gCGCGG--CGC-GCGu-UUUGUGGa--CGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.