miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 3' -57.2 NC_001875.2 + 74817 0.72 0.480375
Target:  5'- aCGCGCCcaGCgGCGCGuuACACuccauugacggccgCUGCUCGg -3'
miRNA:   3'- -GCGCGG--CG-CGCGUuuUGUG--------------GACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 110066 0.73 0.445974
Target:  5'- cCGUGUCGCGCGCAGAG-ACgCUGCgCGu -3'
miRNA:   3'- -GCGCGGCGCGCGUUUUgUG-GACGaGC- -5'
6735 3' -57.2 NC_001875.2 + 32799 0.73 0.455138
Target:  5'- gGCGCCGCGCcgGCAAGcucggcgaacgGCGCC-GCUUGc -3'
miRNA:   3'- gCGCGGCGCG--CGUUU-----------UGUGGaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 10401 0.73 0.455138
Target:  5'- cCGCGCCGUgGCGCG--GCACCcGCUg- -3'
miRNA:   3'- -GCGCGGCG-CGCGUuuUGUGGaCGAgc -5'
6735 3' -57.2 NC_001875.2 + 90383 0.73 0.464403
Target:  5'- -aCGCCGCGCGCGccgcaaccGGCGCCUGUgcgCGc -3'
miRNA:   3'- gcGCGGCGCGCGUu-------UUGUGGACGa--GC- -5'
6735 3' -57.2 NC_001875.2 + 38455 0.72 0.470009
Target:  5'- aGUGCCgGCGCGCGcuagaauuggugcAGCGCgUGCUCGa -3'
miRNA:   3'- gCGCGG-CGCGCGUu------------UUGUGgACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 62245 0.72 0.470009
Target:  5'- gCGCGCCGCGUaaaGCGccacacguacuccGACACCUGCguaUCGg -3'
miRNA:   3'- -GCGCGGCGCG---CGUu------------UUGUGGACG---AGC- -5'
6735 3' -57.2 NC_001875.2 + 100903 0.72 0.473765
Target:  5'- gGCGCCgcaGCGCGCGGAGacgcguCGCCgcGCUCGc -3'
miRNA:   3'- gCGCGG---CGCGCGUUUU------GUGGa-CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 6955 0.72 0.473765
Target:  5'- uGCGCCGCGacauCGCcacGGCGCgCUGCUUGa -3'
miRNA:   3'- gCGCGGCGC----GCGuu-UUGUG-GACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 71945 0.73 0.445974
Target:  5'- gCGCGCucCGCGCGCAGccuguCGCCgcgaaGCUCGu -3'
miRNA:   3'- -GCGCG--GCGCGCGUUuu---GUGGa----CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 66063 0.73 0.436913
Target:  5'- cCGaCGCCGCGCGCGugcucgcccAGcCGCCgGCUCa -3'
miRNA:   3'- -GC-GCGGCGCGCGU---------UUuGUGGaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 10686 0.73 0.436913
Target:  5'- gGCGCUGC-CGCAAcggcugGACGCCccGCUCGa -3'
miRNA:   3'- gCGCGGCGcGCGUU------UUGUGGa-CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 130873 0.77 0.254977
Target:  5'- gCGuCGCCGCGUGCaAGAACGgUUGCUCa -3'
miRNA:   3'- -GC-GCGGCGCGCG-UUUUGUgGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 41851 0.76 0.287034
Target:  5'- cCGCGCCGCgGCgGCGAGcuGCAacaaCUGCUCGu -3'
miRNA:   3'- -GCGCGGCG-CG-CGUUU--UGUg---GACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 81355 0.76 0.307748
Target:  5'- gGUGCCGCGCGCAc-GCGCCgGCcgCGu -3'
miRNA:   3'- gCGCGGCGCGCGUuuUGUGGaCGa-GC- -5'
6735 3' -57.2 NC_001875.2 + 32136 0.76 0.314902
Target:  5'- aGCGCCGCauaGCGCucaacggcggcgAAGACGCgCUGCUCa -3'
miRNA:   3'- gCGCGGCG---CGCG------------UUUUGUG-GACGAGc -5'
6735 3' -57.2 NC_001875.2 + 29847 0.75 0.337114
Target:  5'- cCGcCGCCGCGCacgccgcaauGCAcAACGCCUGCgUCGc -3'
miRNA:   3'- -GC-GCGGCGCG----------CGUuUUGUGGACG-AGC- -5'
6735 3' -57.2 NC_001875.2 + 100195 0.75 0.352544
Target:  5'- gCGCGCCGuUGUGCGAca-ACUUGCUCGu -3'
miRNA:   3'- -GCGCGGC-GCGCGUUuugUGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 45704 0.74 0.384879
Target:  5'- -uCGCCGCGCGCGccGCGCaCUGC-CGa -3'
miRNA:   3'- gcGCGGCGCGCGUuuUGUG-GACGaGC- -5'
6735 3' -57.2 NC_001875.2 + 47685 0.73 0.42796
Target:  5'- gCGCGCCGCGCGUuucucaacgcGGGGCaagugcacgacuGCCUGCUg- -3'
miRNA:   3'- -GCGCGGCGCGCG----------UUUUG------------UGGACGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.