Results 1 - 20 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6735 | 3' | -57.2 | NC_001875.2 | + | 12076 | 1.08 | 0.002247 |
Target: 5'- gCGCGCCGCGCGCAAAACACCUGCUCGc -3' miRNA: 3'- -GCGCGGCGCGCGUUUUGUGGACGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 107992 | 0.74 | 0.401766 |
Target: 5'- gCGCGUCGCaagGCGCAccGGGCGCggGCUCGg -3' miRNA: 3'- -GCGCGGCG---CGCGU--UUUGUGgaCGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 113717 | 0.73 | 0.436913 |
Target: 5'- gCGCGCCGUGCGCGAccGCGCC-GUUg- -3' miRNA: 3'- -GCGCGGCGCGCGUUu-UGUGGaCGAgc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 62759 | 0.66 | 0.850781 |
Target: 5'- cCGCGCCGUugaacGCGCAGGgguGCGuuUGCa-- -3' miRNA: 3'- -GCGCGGCG-----CGCGUUU---UGUggACGagc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 10597 | 0.77 | 0.267434 |
Target: 5'- cCGCGCCGCGU-CAAAGCugCUGCg-- -3' miRNA: 3'- -GCGCGGCGCGcGUUUUGugGACGagc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 37204 | 0.76 | 0.293814 |
Target: 5'- cCGCGuCCGCGCGCGugcAGCGCCgUGCaCGg -3' miRNA: 3'- -GCGC-GGCGCGCGUu--UUGUGG-ACGaGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 117771 | 0.76 | 0.307748 |
Target: 5'- gGgGCCGUGCGCAAAGCGCCuacgUGaCUUGu -3' miRNA: 3'- gCgCGGCGCGCGUUUUGUGG----AC-GAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 92672 | 0.75 | 0.329585 |
Target: 5'- aCGCGCCGgGCGCGcacGAGCGCCcGUUUu -3' miRNA: 3'- -GCGCGGCgCGCGU---UUUGUGGaCGAGc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 52702 | 0.75 | 0.352544 |
Target: 5'- gCGCGCgUGCGCGCAuacuGGCGCgUGCUUu -3' miRNA: 3'- -GCGCG-GCGCGCGUu---UUGUGgACGAGc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 43027 | 0.74 | 0.384879 |
Target: 5'- aCGCGuuGCGCugGCGGAccuGCGCCUGCggCGc -3' miRNA: 3'- -GCGCggCGCG--CGUUU---UGUGGACGa-GC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 100845 | 0.75 | 0.360445 |
Target: 5'- aCGCGCCGCGCGCGgagucGGACAgUgUGCUa- -3' miRNA: 3'- -GCGCGGCGCGCGU-----UUUGU-GgACGAgc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 129692 | 0.75 | 0.337114 |
Target: 5'- cCGUgGCCGCGCGCAGcuCGgCCaGCUCGg -3' miRNA: 3'- -GCG-CGGCGCGCGUUuuGU-GGaCGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 21411 | 0.8 | 0.171799 |
Target: 5'- cCGCGCCGCGCGC---GCGCCUGgaCc -3' miRNA: 3'- -GCGCGGCGCGCGuuuUGUGGACgaGc -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 19264 | 0.74 | 0.375793 |
Target: 5'- gCGCGUCGCGCGCAcAGCAacacggcCCUG-UCGg -3' miRNA: 3'- -GCGCGGCGCGCGUuUUGU-------GGACgAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 45596 | 0.79 | 0.199218 |
Target: 5'- aGCGCCGaguucgaCGCGCAAAACaACCUGCgCGg -3' miRNA: 3'- gCGCGGC-------GCGCGUUUUG-UGGACGaGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 126483 | 0.75 | 0.329585 |
Target: 5'- gGCGCaCGCGCGCAGuuuACGCCgGC-CGc -3' miRNA: 3'- gCGCG-GCGCGCGUUu--UGUGGaCGaGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 129066 | 0.74 | 0.376613 |
Target: 5'- uCGUGCaaauucacCGCGCGCuggcGCGCUUGCUCGg -3' miRNA: 3'- -GCGCG--------GCGCGCGuuu-UGUGGACGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 85441 | 0.73 | 0.419116 |
Target: 5'- cCGCGCCGCccGCGCAA---ACCgUGUUCGg -3' miRNA: 3'- -GCGCGGCG--CGCGUUuugUGG-ACGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 85402 | 0.78 | 0.237189 |
Target: 5'- cCGCGCCGaGCGCGGAAC-CCgcGCUCGu -3' miRNA: 3'- -GCGCGGCgCGCGUUUUGuGGa-CGAGC- -5' |
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6735 | 3' | -57.2 | NC_001875.2 | + | 117819 | 0.76 | 0.307748 |
Target: 5'- gGgGCCGUGCGCAAAGCGCCuacgUGaCUUGu -3' miRNA: 3'- gCgCGGCGCGCGUUUUGUGG----AC-GAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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