miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 3' -57.2 NC_001875.2 + 10313 0.68 0.753485
Target:  5'- aCGCGCUG-GUGUuuGGGCACCUGUUUc -3'
miRNA:   3'- -GCGCGGCgCGCGu-UUUGUGGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 10401 0.73 0.455138
Target:  5'- cCGCGCCGUgGCGCG--GCACCcGCUg- -3'
miRNA:   3'- -GCGCGGCG-CGCGUuuUGUGGaCGAgc -5'
6735 3' -57.2 NC_001875.2 + 10461 0.68 0.743818
Target:  5'- gCGCgGCgGCGCGCucagugaauGGCGCUUGCUg- -3'
miRNA:   3'- -GCG-CGgCGCGCGuu-------UUGUGGACGAgc -5'
6735 3' -57.2 NC_001875.2 + 10571 0.68 0.753485
Target:  5'- gGCaGCUGCGCGaCAAcgugcAGCugCUGCUg- -3'
miRNA:   3'- gCG-CGGCGCGC-GUU-----UUGugGACGAgc -5'
6735 3' -57.2 NC_001875.2 + 10597 0.77 0.267434
Target:  5'- cCGCGCCGCGU-CAAAGCugCUGCg-- -3'
miRNA:   3'- -GCGCGGCGCGcGUUUUGugGACGagc -5'
6735 3' -57.2 NC_001875.2 + 10686 0.73 0.436913
Target:  5'- gGCGCUGC-CGCAAcggcugGACGCCccGCUCGa -3'
miRNA:   3'- gCGCGGCGcGCGUU------UUGUGGa-CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 11963 0.67 0.772488
Target:  5'- gGCGgCGCGuUGCAAAGCACUgGCgaCGg -3'
miRNA:   3'- gCGCgGCGC-GCGUUUUGUGGaCGa-GC- -5'
6735 3' -57.2 NC_001875.2 + 12076 1.08 0.002247
Target:  5'- gCGCGCCGCGCGCAAAACACCUGCUCGc -3'
miRNA:   3'- -GCGCGGCGCGCGUUUUGUGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 12585 0.73 0.464403
Target:  5'- -cCGCgGCGCGCAcgcAACgGCCUGCUUGg -3'
miRNA:   3'- gcGCGgCGCGCGUu--UUG-UGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 13533 0.73 0.445974
Target:  5'- gGUGCCGUGCGUAGAaacggugcGCACCaGCUUc -3'
miRNA:   3'- gCGCGGCGCGCGUUU--------UGUGGaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 13635 0.7 0.61255
Target:  5'- aCGCGUCGCucaacaucuugaGCGCAAucuGCAgCUGCUUc -3'
miRNA:   3'- -GCGCGGCG------------CGCGUUu--UGUgGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 13865 0.66 0.817641
Target:  5'- uGCG-CGCGCGCAAcAgGCCauuuuggcGCUCGc -3'
miRNA:   3'- gCGCgGCGCGCGUUuUgUGGa-------CGAGC- -5'
6735 3' -57.2 NC_001875.2 + 13905 0.67 0.800027
Target:  5'- aCGCgGCgGCGCGCAc-GCcgGCCUGCa-- -3'
miRNA:   3'- -GCG-CGgCGCGCGUuuUG--UGGACGagc -5'
6735 3' -57.2 NC_001875.2 + 14515 0.69 0.643278
Target:  5'- cCGCGCCGCGcCGUGucaaGCC-GCUCa -3'
miRNA:   3'- -GCGCGGCGC-GCGUuuugUGGaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 15358 0.68 0.7242
Target:  5'- -aCGCCGCGUGCA--GCACUaGCUg- -3'
miRNA:   3'- gcGCGGCGCGCGUuuUGUGGaCGAgc -5'
6735 3' -57.2 NC_001875.2 + 18064 0.69 0.673925
Target:  5'- uGcCGCCGCuucggGCGCGAccucauuaacGGCGgCUGCUCGu -3'
miRNA:   3'- gC-GCGGCG-----CGCGUU----------UUGUgGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 18159 0.69 0.68307
Target:  5'- gGUGCgGCGCGCGcGACGCCgccacuguggcggUGC-CGg -3'
miRNA:   3'- gCGCGgCGCGCGUuUUGUGG-------------ACGaGC- -5'
6735 3' -57.2 NC_001875.2 + 18481 0.69 0.6942
Target:  5'- uGCGCCGCGcCGCAGcGACGCa-GC-CGc -3'
miRNA:   3'- gCGCGGCGC-GCGUU-UUGUGgaCGaGC- -5'
6735 3' -57.2 NC_001875.2 + 18762 0.66 0.808033
Target:  5'- gGCGCUGaCGCGCGucGCcaucaaaGCCaGCUCu -3'
miRNA:   3'- gCGCGGC-GCGCGUuuUG-------UGGaCGAGc -5'
6735 3' -57.2 NC_001875.2 + 19264 0.74 0.375793
Target:  5'- gCGCGUCGCGCGCAcAGCAacacggcCCUG-UCGg -3'
miRNA:   3'- -GCGCGGCGCGCGUuUUGU-------GGACgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.