miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 3' -57.2 NC_001875.2 + 131693 0.69 0.673925
Target:  5'- gGCGCCGCGUGCcu-GC-CUUGCa-- -3'
miRNA:   3'- gCGCGGCGCGCGuuuUGuGGACGagc -5'
6735 3' -57.2 NC_001875.2 + 131183 0.66 0.826199
Target:  5'- aCGUGCCGUGCcCGG---ACCUGUUUGa -3'
miRNA:   3'- -GCGCGGCGCGcGUUuugUGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 130873 0.77 0.254977
Target:  5'- gCGuCGCCGCGUGCaAGAACGgUUGCUCa -3'
miRNA:   3'- -GC-GCGGCGCGCG-UUUUGUgGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 130611 0.69 0.673925
Target:  5'- uGCGCCGgGCGuCGGGAU-CCUGCa-- -3'
miRNA:   3'- gCGCGGCgCGC-GUUUUGuGGACGagc -5'
6735 3' -57.2 NC_001875.2 + 129692 0.75 0.337114
Target:  5'- cCGUgGCCGCGCGCAGcuCGgCCaGCUCGg -3'
miRNA:   3'- -GCG-CGGCGCGCGUUuuGU-GGaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 129194 0.69 0.69117
Target:  5'- gGCGCCGCaaguagacguguccGUGCugugccACAUCUGCUCu -3'
miRNA:   3'- gCGCGGCG--------------CGCGuuu---UGUGGACGAGc -5'
6735 3' -57.2 NC_001875.2 + 129066 0.74 0.376613
Target:  5'- uCGUGCaaauucacCGCGCGCuggcGCGCUUGCUCGg -3'
miRNA:   3'- -GCGCG--------GCGCGCGuuu-UGUGGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 128907 0.68 0.704264
Target:  5'- gCGCGCCaGCGCGCGGugaAUUUGCaCGa -3'
miRNA:   3'- -GCGCGG-CGCGCGUUuugUGGACGaGC- -5'
6735 3' -57.2 NC_001875.2 + 128785 0.71 0.571817
Target:  5'- gCGCGCCGCuGCGCGccucuuACGCgCUGCcCa -3'
miRNA:   3'- -GCGCGGCG-CGCGUuu----UGUG-GACGaGc -5'
6735 3' -57.2 NC_001875.2 + 128183 0.66 0.817641
Target:  5'- gCGCGCaaGCGCGCAGcacacACGCCagcgGCUUu -3'
miRNA:   3'- -GCGCGg-CGCGCGUUu----UGUGGa---CGAGc -5'
6735 3' -57.2 NC_001875.2 + 127248 0.67 0.772488
Target:  5'- aGCGCggccucuuCGUGCGCAugucgggcauGCGgCUGCUCGc -3'
miRNA:   3'- gCGCG--------GCGCGCGUuu--------UGUgGACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 126976 0.67 0.763044
Target:  5'- uGCGCCGCaGCGU---GCACgaGCUg- -3'
miRNA:   3'- gCGCGGCG-CGCGuuuUGUGgaCGAgc -5'
6735 3' -57.2 NC_001875.2 + 126638 0.68 0.753485
Target:  5'- gGCGUCGgGCGCGuaa-ACCUGgaCGu -3'
miRNA:   3'- gCGCGGCgCGCGUuuugUGGACgaGC- -5'
6735 3' -57.2 NC_001875.2 + 126483 0.75 0.329585
Target:  5'- gGCGCaCGCGCGCAGuuuACGCCgGC-CGc -3'
miRNA:   3'- gCGCG-GCGCGCGUUu--UGUGGaCGaGC- -5'
6735 3' -57.2 NC_001875.2 + 126347 0.67 0.772488
Target:  5'- uGCGCCGguCGUGCuguGCACCgaGUUCa -3'
miRNA:   3'- gCGCGGC--GCGCGuuuUGUGGa-CGAGc -5'
6735 3' -57.2 NC_001875.2 + 126104 0.68 0.714267
Target:  5'- aGCGCCGCGuCGCcaucAACgACCacuuUGUUCGg -3'
miRNA:   3'- gCGCGGCGC-GCGuu--UUG-UGG----ACGAGC- -5'
6735 3' -57.2 NC_001875.2 + 124885 0.69 0.653514
Target:  5'- gCGCGCCGUggcgaugucgcgGCGCAcgcacGACGCgUUGCUCa -3'
miRNA:   3'- -GCGCGGCG------------CGCGUu----UUGUG-GACGAGc -5'
6735 3' -57.2 NC_001875.2 + 122846 0.66 0.842776
Target:  5'- uGCGCCGCGaCGUGuuucgcugcCACCcGUUCGu -3'
miRNA:   3'- gCGCGGCGC-GCGUuuu------GUGGaCGAGC- -5'
6735 3' -57.2 NC_001875.2 + 122541 0.66 0.817641
Target:  5'- uGCGuCCgGCGCGCAGuGCACaUGUauaUCGg -3'
miRNA:   3'- gCGC-GG-CGCGCGUUuUGUGgACG---AGC- -5'
6735 3' -57.2 NC_001875.2 + 122473 0.7 0.581953
Target:  5'- uGCGgCGCGCGCA--GCACCuuUGCg-- -3'
miRNA:   3'- gCGCgGCGCGCGUuuUGUGG--ACGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.