miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 102157 0.66 0.954762
Target:  5'- gGUGUACAGCUCg--UugGCGUU-CCa -3'
miRNA:   3'- gCGCGUGUUGAGauuGugCGCGAcGG- -5'
6735 5' -53.5 NC_001875.2 + 26906 0.66 0.954762
Target:  5'- aCGCGCGCgu-UCU-GCugGCGCaggGUCa -3'
miRNA:   3'- -GCGCGUGuugAGAuUGugCGCGa--CGG- -5'
6735 5' -53.5 NC_001875.2 + 108733 0.66 0.94167
Target:  5'- aCGCGUugGAaa--AACugGCGC-GCCa -3'
miRNA:   3'- -GCGCGugUUgagaUUGugCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 31838 0.66 0.954762
Target:  5'- uGCGCuguuuuuguuugACAACUUUAAauCGCGCGUggacuggcGCCg -3'
miRNA:   3'- gCGCG------------UGUUGAGAUU--GUGCGCGa-------CGG- -5'
6735 5' -53.5 NC_001875.2 + 110756 0.66 0.946279
Target:  5'- aGCGCgGCGAC-CgccgcCGCGCGCUuuuGCCc -3'
miRNA:   3'- gCGCG-UGUUGaGauu--GUGCGCGA---CGG- -5'
6735 5' -53.5 NC_001875.2 + 49855 0.66 0.954762
Target:  5'- gCGCGC-CGGC-C-GGCGCGCcUUGCCg -3'
miRNA:   3'- -GCGCGuGUUGaGaUUGUGCGcGACGG- -5'
6735 5' -53.5 NC_001875.2 + 74370 0.66 0.946279
Target:  5'- gCGUGCGCGGCcgcggcgcguUCaGGCGCGgGUacUGCCu -3'
miRNA:   3'- -GCGCGUGUUG----------AGaUUGUGCgCG--ACGG- -5'
6735 5' -53.5 NC_001875.2 + 130035 0.66 0.950642
Target:  5'- uGaCGCACcGCUaaaaaUAGCACGCGCcGUUc -3'
miRNA:   3'- gC-GCGUGuUGAg----AUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 72576 0.66 0.950642
Target:  5'- gCGgGCGCuGCggguGCGgGCGCUGCg -3'
miRNA:   3'- -GCgCGUGuUGagauUGUgCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 73750 0.66 0.94167
Target:  5'- aCGCuaACAACgugcGCACGCGCcagaccGCCg -3'
miRNA:   3'- -GCGcgUGUUGagauUGUGCGCGa-----CGG- -5'
6735 5' -53.5 NC_001875.2 + 127882 0.66 0.946279
Target:  5'- gGCaaGCGCGGCgucguugUUGACACGCugcaGCUGCa -3'
miRNA:   3'- gCG--CGUGUUGa------GAUUGUGCG----CGACGg -5'
6735 5' -53.5 NC_001875.2 + 76263 0.66 0.954762
Target:  5'- uGCGcCACAaaauccagacuGCUUUuuuCGCGCGUaGCCa -3'
miRNA:   3'- gCGC-GUGU-----------UGAGAuu-GUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 130293 0.66 0.950642
Target:  5'- uGaCGCACcGCUaaaaaUAGCACGCGCcGUUc -3'
miRNA:   3'- gC-GCGUGuUGAg----AUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 12887 0.66 0.958642
Target:  5'- aGCGUACAcaaGCUUgcGACACccuaGCGCcgGCCc -3'
miRNA:   3'- gCGCGUGU---UGAGa-UUGUG----CGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 53940 0.66 0.954762
Target:  5'- gCGCGCACGAUUCUuGgGgGC-CcGCCu -3'
miRNA:   3'- -GCGCGUGUUGAGAuUgUgCGcGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 128649 0.66 0.946279
Target:  5'- cCGC-CGCAAC-CUGucuCugGUGCgcgGCCg -3'
miRNA:   3'- -GCGcGUGUUGaGAUu--GugCGCGa--CGG- -5'
6735 5' -53.5 NC_001875.2 + 61991 0.66 0.954762
Target:  5'- uGCGCgGCGAC---AugACGCGUUGCa -3'
miRNA:   3'- gCGCG-UGUUGagaUugUGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 53856 0.66 0.946279
Target:  5'- uCGCGCACg---CUGGCAC-CGUcgGCCu -3'
miRNA:   3'- -GCGCGUGuugaGAUUGUGcGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 98333 0.66 0.950642
Target:  5'- aCGUGCACAugUUg-----GCGCUGCg -3'
miRNA:   3'- -GCGCGUGUugAGauugugCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 130161 0.66 0.950642
Target:  5'- uGaCGCACcGCUaaaaaUAGCACGCGCcGUUc -3'
miRNA:   3'- gC-GCGUGuUGAg----AUUGUGCGCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.