miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 6796 0.65 0.961218
Target:  5'- gCGCGCGCAAUguuucccgaucgCUGGCACGaguacacCGCgUGCg -3'
miRNA:   3'- -GCGCGUGUUGa-----------GAUUGUGC-------GCG-ACGg -5'
6735 5' -53.5 NC_001875.2 + 48256 0.65 0.961577
Target:  5'- uCGCGUACaccaaaaAugUCUGAUAaauguacugcgauUGaCGCUGCCa -3'
miRNA:   3'- -GCGCGUG-------UugAGAUUGU-------------GC-GCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 111988 0.66 0.946279
Target:  5'- cCGCGaCGCGGCcgagUCUu--GCGCGCUGUUu -3'
miRNA:   3'- -GCGC-GUGUUG----AGAuugUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 128649 0.66 0.946279
Target:  5'- cCGC-CGCAAC-CUGucuCugGUGCgcgGCCg -3'
miRNA:   3'- -GCGcGUGUUGaGAUu--GugCGCGa--CGG- -5'
6735 5' -53.5 NC_001875.2 + 97589 0.66 0.949789
Target:  5'- -aCGCACGcggACUgUAACGCGUGCcgugaggggcugGCCa -3'
miRNA:   3'- gcGCGUGU---UGAgAUUGUGCGCGa-----------CGG- -5'
6735 5' -53.5 NC_001875.2 + 74370 0.66 0.946279
Target:  5'- gCGUGCGCGGCcgcggcgcguUCaGGCGCGgGUacUGCCu -3'
miRNA:   3'- -GCGCGUGUUG----------AGaUUGUGCgCG--ACGG- -5'
6735 5' -53.5 NC_001875.2 + 130453 0.66 0.94167
Target:  5'- gGCGcCGCuGACgcaccgCUAGCACGCGCcGUUc -3'
miRNA:   3'- gCGC-GUG-UUGa-----GAUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 62696 0.66 0.941196
Target:  5'- uGUGCGCAgaauGCUCgc-CACGUugcaaacGCUGCUg -3'
miRNA:   3'- gCGCGUGU----UGAGauuGUGCG-------CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 34460 0.66 0.948054
Target:  5'- gCGCGCGCAGCaaaaccugagCUGGCA-GUGCuuggugcuacugaacUGCCa -3'
miRNA:   3'- -GCGCGUGUUGa---------GAUUGUgCGCG---------------ACGG- -5'
6735 5' -53.5 NC_001875.2 + 127882 0.66 0.946279
Target:  5'- gGCaaGCGCGGCgucguugUUGACACGCugcaGCUGCa -3'
miRNA:   3'- gCG--CGUGUUGa------GAUUGUGCG----CGACGg -5'
6735 5' -53.5 NC_001875.2 + 110756 0.66 0.946279
Target:  5'- aGCGCgGCGAC-CgccgcCGCGCGCUuuuGCCc -3'
miRNA:   3'- gCGCG-UGUUGaGauu--GUGCGCGA---CGG- -5'
6735 5' -53.5 NC_001875.2 + 53856 0.66 0.946279
Target:  5'- uCGCGCACg---CUGGCAC-CGUcgGCCu -3'
miRNA:   3'- -GCGCGUGuugaGAUUGUGcGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 95695 0.66 0.946279
Target:  5'- uGCGCaaucuACGGCUCgg--GCGCGCUGaaaCg -3'
miRNA:   3'- gCGCG-----UGUUGAGauugUGCGCGACg--G- -5'
6735 5' -53.5 NC_001875.2 + 51320 0.66 0.946279
Target:  5'- gGCGUcggcCAGCUC--GCACGCGCcauggUGUCg -3'
miRNA:   3'- gCGCGu---GUUGAGauUGUGCGCG-----ACGG- -5'
6735 5' -53.5 NC_001875.2 + 42062 0.66 0.94167
Target:  5'- uCGCGCACGugcACg--AGCGCGuCGCcgaccaccauuuUGCCg -3'
miRNA:   3'- -GCGCGUGU---UGagaUUGUGC-GCG------------ACGG- -5'
6735 5' -53.5 NC_001875.2 + 97741 0.66 0.94167
Target:  5'- gCGCGCGC-GCUCgugcaaccccGGCACGgGCgugugGCUg -3'
miRNA:   3'- -GCGCGUGuUGAGa---------UUGUGCgCGa----CGG- -5'
6735 5' -53.5 NC_001875.2 + 128739 0.66 0.946279
Target:  5'- uGCGCGCgAGCcgCgccccGGCGCGUGCacGCCg -3'
miRNA:   3'- gCGCGUG-UUGa-Ga----UUGUGCGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 130035 0.66 0.950642
Target:  5'- uGaCGCACcGCUaaaaaUAGCACGCGCcGUUc -3'
miRNA:   3'- gC-GCGUGuUGAg----AUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 130161 0.66 0.950642
Target:  5'- uGaCGCACcGCUaaaaaUAGCACGCGCcGUUc -3'
miRNA:   3'- gC-GCGUGuUGAg----AUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 73750 0.66 0.94167
Target:  5'- aCGCuaACAACgugcGCACGCGCcagaccGCCg -3'
miRNA:   3'- -GCGcgUGUUGagauUGUGCGCGa-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.