miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 12042 1.13 0.002318
Target:  5'- uCGCGCACAACUCUAACACGCGCUGCCg -3'
miRNA:   3'- -GCGCGUGUUGAGAUUGUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 50104 0.85 0.15645
Target:  5'- gCGCGCGCAGCUCcgacgaccagcugauUAGCGCGCGCgGCUc -3'
miRNA:   3'- -GCGCGUGUUGAG---------------AUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 90641 0.84 0.171846
Target:  5'- cCGCGCGCAGUUUgAACGCGCGCUGCa -3'
miRNA:   3'- -GCGCGUGUUGAGaUUGUGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 66209 0.83 0.190527
Target:  5'- aCGCGCGCGGCgucGGCGCGCGgUGCCu -3'
miRNA:   3'- -GCGCGUGUUGagaUUGUGCGCgACGG- -5'
6735 5' -53.5 NC_001875.2 + 11326 0.82 0.233268
Target:  5'- gGCGCGCAACUUgucgauGCGCGCGCgguacGCCu -3'
miRNA:   3'- gCGCGUGUUGAGau----UGUGCGCGa----CGG- -5'
6735 5' -53.5 NC_001875.2 + 38619 0.81 0.270399
Target:  5'- aCGCGCugcacCAAUUCUAGCGCGCGCcgGCa -3'
miRNA:   3'- -GCGCGu----GUUGAGAUUGUGCGCGa-CGg -5'
6735 5' -53.5 NC_001875.2 + 108568 0.8 0.297707
Target:  5'- aCG-GCGCGGCggugCUGGCGCuGCGCUGCCc -3'
miRNA:   3'- -GCgCGUGUUGa---GAUUGUG-CGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 4422 0.8 0.304859
Target:  5'- -aUGCACGGCggcaugCUGACGCGCGCcGCCa -3'
miRNA:   3'- gcGCGUGUUGa-----GAUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 82315 0.8 0.312143
Target:  5'- gGCGCGCAAUUCUAcUACGaGCUGCUg -3'
miRNA:   3'- gCGCGUGUUGAGAUuGUGCgCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 4736 0.79 0.327105
Target:  5'- uCGUGCGCAugUCgGGCAUGCgGCUGCUc -3'
miRNA:   3'- -GCGCGUGUugAGaUUGUGCG-CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 128790 0.79 0.334782
Target:  5'- cCGCuGCGCGcCUCU--UACGCGCUGCCc -3'
miRNA:   3'- -GCG-CGUGUuGAGAuuGUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 37351 0.79 0.341804
Target:  5'- uGCGCGCGgccgcgcGCUCgugcgAACGCGCGC-GCCg -3'
miRNA:   3'- gCGCGUGU-------UGAGa----UUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 44155 0.79 0.35053
Target:  5'- aGCGCACGucgucGCUCUccucgauuucGCACGCGCUGaCCg -3'
miRNA:   3'- gCGCGUGU-----UGAGAu---------UGUGCGCGAC-GG- -5'
6735 5' -53.5 NC_001875.2 + 35242 0.79 0.35053
Target:  5'- uGUGCACAAaa--AGCGCGCGCUGCUg -3'
miRNA:   3'- gCGCGUGUUgagaUUGUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 82900 0.79 0.3586
Target:  5'- uGCGUACGACUaCUAcguGCGCguaaaGCGCUGCCc -3'
miRNA:   3'- gCGCGUGUUGA-GAU---UGUG-----CGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 10441 0.78 0.383577
Target:  5'- gGCGCAgCAGCUUUGACGCGgCGCgGCg -3'
miRNA:   3'- gCGCGU-GUUGAGAUUGUGC-GCGaCGg -5'
6735 5' -53.5 NC_001875.2 + 39937 0.78 0.400859
Target:  5'- uGCGCGCAAUUU--GCGCGCgGUUGCCc -3'
miRNA:   3'- gCGCGUGUUGAGauUGUGCG-CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 4860 0.77 0.409683
Target:  5'- gCGUGCACAGCUCguGCACGCuGCgGCg -3'
miRNA:   3'- -GCGCGUGUUGAGauUGUGCG-CGaCGg -5'
6735 5' -53.5 NC_001875.2 + 79167 0.77 0.418628
Target:  5'- aGCGCGCGACUCgGACACGCuguccaGCUGg- -3'
miRNA:   3'- gCGCGUGUUGAGaUUGUGCG------CGACgg -5'
6735 5' -53.5 NC_001875.2 + 37041 0.77 0.418628
Target:  5'- cCGUGCACGGCgcguGCACGCGCgcggacgcgGCCa -3'
miRNA:   3'- -GCGCGUGUUGagauUGUGCGCGa--------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.