miRNA display CGI


Results 1 - 20 of 431 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 381 0.7 0.826022
Target:  5'- aCGUGCGCAAUUUgAugGCGCGCgacuuuguguuuUGCUu -3'
miRNA:   3'- -GCGCGUGUUGAGaUugUGCGCG------------ACGG- -5'
6735 5' -53.5 NC_001875.2 + 589 0.69 0.851214
Target:  5'- gCGuCGCACAACUgccgcacuauaUUAACcaccaGCGCGUUGUCa -3'
miRNA:   3'- -GC-GCGUGUUGA-----------GAUUG-----UGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 933 0.72 0.67899
Target:  5'- cCGCGCACAGCUUUAGCgccgacgaaaucaACGUGCacgauuuaaUGUCu -3'
miRNA:   3'- -GCGCGUGUUGAGAUUG-------------UGCGCG---------ACGG- -5'
6735 5' -53.5 NC_001875.2 + 1046 0.68 0.893075
Target:  5'- gGCGCACAGCguugggcgcaacgUUGGCGacCGCGCgGUCa -3'
miRNA:   3'- gCGCGUGUUGa------------GAUUGU--GCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 1197 0.69 0.870023
Target:  5'- uGCGCcCAACgCUGugcgccucgggccccGcCACGCGCUGCa -3'
miRNA:   3'- gCGCGuGUUGaGAU---------------U-GUGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 1428 0.68 0.874526
Target:  5'- aCGCGCaACAGCgCUucaAUGCGC-GCCa -3'
miRNA:   3'- -GCGCG-UGUUGaGAuugUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 3699 0.69 0.866976
Target:  5'- aCGCGcCACGGCgccgGugACGUGC-GCCa -3'
miRNA:   3'- -GCGC-GUGUUGaga-UugUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 3806 0.66 0.954762
Target:  5'- aGCGCGCAGCac--ACACGCcaGCgGCUu -3'
miRNA:   3'- gCGCGUGUUGagauUGUGCG--CGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 4047 0.68 0.90813
Target:  5'- uGCGCggaaaagGCGGCUCUGAaGCGCGUggagauUGCg -3'
miRNA:   3'- gCGCG-------UGUUGAGAUUgUGCGCG------ACGg -5'
6735 5' -53.5 NC_001875.2 + 4371 0.67 0.926344
Target:  5'- -cUGUACAugUUgccgcGugGCGCGCUGCUc -3'
miRNA:   3'- gcGCGUGUugAGa----UugUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 4422 0.8 0.304859
Target:  5'- -aUGCACGGCggcaugCUGACGCGCGCcGCCa -3'
miRNA:   3'- gcGCGUGUUGa-----GAUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 4461 0.7 0.808286
Target:  5'- aCGUGCACAaaaugcaagaccGCgugcUUGAUcgGCGCGCUGCUg -3'
miRNA:   3'- -GCGCGUGU------------UGa---GAUUG--UGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 4736 0.79 0.327105
Target:  5'- uCGUGCGCAugUCgGGCAUGCgGCUGCUc -3'
miRNA:   3'- -GCGCGUGUugAGaUUGUGCG-CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 4860 0.77 0.409683
Target:  5'- gCGUGCACAGCUCguGCACGCuGCgGCg -3'
miRNA:   3'- -GCGCGUGUUGAGauUGUGCG-CGaCGg -5'
6735 5' -53.5 NC_001875.2 + 5011 0.69 0.866976
Target:  5'- gCGUGCACgAGCUgU-GCACGCGUU-CCg -3'
miRNA:   3'- -GCGCGUG-UUGAgAuUGUGCGCGAcGG- -5'
6735 5' -53.5 NC_001875.2 + 5183 0.68 0.874526
Target:  5'- gGCGCAgAcugaaUCUGACaaaGCGCGC-GCCg -3'
miRNA:   3'- gCGCGUgUug---AGAUUG---UGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 5281 0.69 0.843016
Target:  5'- gGCGCACGuccgcggACgugaccuuuccgucgUUAGCGCGCGCaGCCc -3'
miRNA:   3'- gCGCGUGU-------UGa--------------GAUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 5461 0.68 0.895112
Target:  5'- aGCGCGCAAUggaguggUCgucgGGCGCGgGCacgucgGCCa -3'
miRNA:   3'- gCGCGUGUUG-------AGa---UUGUGCgCGa-----CGG- -5'
6735 5' -53.5 NC_001875.2 + 6027 0.67 0.914869
Target:  5'- gGCGCAuCGGCgagggCaAACGCGUGCUGgUg -3'
miRNA:   3'- gCGCGU-GUUGa----GaUUGUGCGCGACgG- -5'
6735 5' -53.5 NC_001875.2 + 6212 0.68 0.908755
Target:  5'- aGCGCGCAAUugcguccgUCggcGACACGCcCaGCCg -3'
miRNA:   3'- gCGCGUGUUG--------AGa--UUGUGCGcGaCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.