miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 131681 0.68 0.902393
Target:  5'- aGC-CACGugUUUGGCGcCGCGUgccUGCCu -3'
miRNA:   3'- gCGcGUGUugAGAUUGU-GCGCG---ACGG- -5'
6735 5' -53.5 NC_001875.2 + 131493 0.68 0.888936
Target:  5'- aCGUGCAgauCGACagUCUGcgGCGCGCGgUGCa -3'
miRNA:   3'- -GCGCGU---GUUG--AGAU--UGUGCGCgACGg -5'
6735 5' -53.5 NC_001875.2 + 131359 0.71 0.769904
Target:  5'- gGCGCACAacguggcuuggaACUCUucgugugAGCAggucacCGCGCUGCa -3'
miRNA:   3'- gCGCGUGU------------UGAGA-------UUGU------GCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 130453 0.66 0.94167
Target:  5'- gGCGcCGCuGACgcaccgCUAGCACGCGCcGUUc -3'
miRNA:   3'- gCGC-GUG-UUGa-----GAUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 130293 0.66 0.950642
Target:  5'- uGaCGCACcGCUaaaaaUAGCACGCGCcGUUc -3'
miRNA:   3'- gC-GCGUGuUGAg----AUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 130227 0.66 0.950642
Target:  5'- uGaCGCACcGCUaaaaaUAGCACGCGCcGUUc -3'
miRNA:   3'- gC-GCGUGuUGAg----AUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 130161 0.66 0.950642
Target:  5'- uGaCGCACcGCUaaaaaUAGCACGCGCcGUUc -3'
miRNA:   3'- gC-GCGUGuUGAg----AUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 130035 0.66 0.950642
Target:  5'- uGaCGCACcGCUaaaaaUAGCACGCGCcGUUc -3'
miRNA:   3'- gC-GCGUGuUGAg----AUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 129783 0.68 0.881848
Target:  5'- uCGUGUGCaAGCUCUGccuccuuCACGUccaguuGCUGCCg -3'
miRNA:   3'- -GCGCGUG-UUGAGAUu------GUGCG------CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 129686 0.69 0.859203
Target:  5'- cCGCGCGCAGCUCggccAGCucgGC-CUGCa -3'
miRNA:   3'- -GCGCGUGUUGAGa---UUGug-CGcGACGg -5'
6735 5' -53.5 NC_001875.2 + 129547 0.72 0.711036
Target:  5'- uGCGCGCGGCcacGGCGCGCGC-GCa -3'
miRNA:   3'- gCGCGUGUUGagaUUGUGCGCGaCGg -5'
6735 5' -53.5 NC_001875.2 + 129044 0.66 0.958642
Target:  5'- gGCGCGCuuGCUC-GGCA-GCGgUGUCg -3'
miRNA:   3'- gCGCGUGu-UGAGaUUGUgCGCgACGG- -5'
6735 5' -53.5 NC_001875.2 + 128790 0.79 0.334782
Target:  5'- cCGCuGCGCGcCUCU--UACGCGCUGCCc -3'
miRNA:   3'- -GCG-CGUGUuGAGAuuGUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 128739 0.66 0.946279
Target:  5'- uGCGCGCgAGCcgCgccccGGCGCGUGCacGCCg -3'
miRNA:   3'- gCGCGUG-UUGa-Ga----UUGUGCGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 128649 0.66 0.946279
Target:  5'- cCGC-CGCAAC-CUGucuCugGUGCgcgGCCg -3'
miRNA:   3'- -GCGcGUGUUGaGAUu--GugCGCGa--CGG- -5'
6735 5' -53.5 NC_001875.2 + 128635 0.66 0.94167
Target:  5'- aCGCGCAUGAga-UAACGCGCgGCUGa- -3'
miRNA:   3'- -GCGCGUGUUgagAUUGUGCG-CGACgg -5'
6735 5' -53.5 NC_001875.2 + 127961 0.68 0.874526
Target:  5'- aGCcuGCcCAGCUUggcGGCGCgGUGCUGCCg -3'
miRNA:   3'- gCG--CGuGUUGAGa--UUGUG-CGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 127882 0.66 0.946279
Target:  5'- gGCaaGCGCGGCgucguugUUGACACGCugcaGCUGCa -3'
miRNA:   3'- gCG--CGUGUUGa------GAUUGUGCG----CGACGg -5'
6735 5' -53.5 NC_001875.2 + 127437 0.68 0.90813
Target:  5'- aGCGCACGucggCaAGCAauguugcCGCGCUGUCa -3'
miRNA:   3'- gCGCGUGUuga-GaUUGU-------GCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 127060 0.66 0.946279
Target:  5'- uGCGgGgCAGCaCUAACACuuuGCGCcGCCu -3'
miRNA:   3'- gCGCgU-GUUGaGAUUGUG---CGCGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.