miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 96859 0.75 0.534212
Target:  5'- gCGCGCACAAUUUUGgaaaACgACGCGCUagacaacugGCCg -3'
miRNA:   3'- -GCGCGUGUUGAGAU----UG-UGCGCGA---------CGG- -5'
6735 5' -53.5 NC_001875.2 + 30440 0.77 0.446157
Target:  5'- aGCGUcCAACgcgcagCUGGCGCGCGUUGCg -3'
miRNA:   3'- gCGCGuGUUGa-----GAUUGUGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 46015 0.76 0.465061
Target:  5'- gGUGCACGACgugCUGauuuugauucaACACGCGCgcGCCg -3'
miRNA:   3'- gCGCGUGUUGa--GAU-----------UGUGCGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 9923 0.76 0.484372
Target:  5'- gGCGCGCGggccgcaaguAUUCUAGCG-GUGCUGCCc -3'
miRNA:   3'- gCGCGUGU----------UGAGAUUGUgCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 54005 0.76 0.484372
Target:  5'- uCGCGCACGGC-CUuggcGGCGCGCGCguaCCg -3'
miRNA:   3'- -GCGCGUGUUGaGA----UUGUGCGCGac-GG- -5'
6735 5' -53.5 NC_001875.2 + 13868 0.76 0.493187
Target:  5'- gCGCGCGCAACaggccauUUUGGCGCuCGCUGCa -3'
miRNA:   3'- -GCGCGUGUUG-------AGAUUGUGcGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 49935 0.76 0.494171
Target:  5'- gCGCGCGCuAAUcagCUGgucgucggagcuGCGCGCGCUGCUg -3'
miRNA:   3'- -GCGCGUG-UUGa--GAU------------UGUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 65200 0.76 0.50406
Target:  5'- aCGgaGCGCAGCUCcAGCAUGCGCUuGCa -3'
miRNA:   3'- -GCg-CGUGUUGAGaUUGUGCGCGA-CGg -5'
6735 5' -53.5 NC_001875.2 + 71183 0.75 0.524085
Target:  5'- aGCGCGC-ACUUUggUACGCGCauugGCUg -3'
miRNA:   3'- gCGCGUGuUGAGAuuGUGCGCGa---CGG- -5'
6735 5' -53.5 NC_001875.2 + 86316 0.77 0.42769
Target:  5'- aGgGCauuaGCAGCUUUGGCGCGUugGCUGCCg -3'
miRNA:   3'- gCgCG----UGUUGAGAUUGUGCG--CGACGG- -5'
6735 5' -53.5 NC_001875.2 + 37041 0.77 0.418628
Target:  5'- cCGUGCACGGCgcguGCACGCGCgcggacgcgGCCa -3'
miRNA:   3'- -GCGCGUGUUGagauUGUGCGCGa--------CGG- -5'
6735 5' -53.5 NC_001875.2 + 4860 0.77 0.409683
Target:  5'- gCGUGCACAGCUCguGCACGCuGCgGCg -3'
miRNA:   3'- -GCGCGUGUUGAGauUGUGCG-CGaCGg -5'
6735 5' -53.5 NC_001875.2 + 4422 0.8 0.304859
Target:  5'- -aUGCACGGCggcaugCUGACGCGCGCcGCCa -3'
miRNA:   3'- gcGCGUGUUGa-----GAUUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 82315 0.8 0.312143
Target:  5'- gGCGCGCAAUUCUAcUACGaGCUGCUg -3'
miRNA:   3'- gCGCGUGUUGAGAUuGUGCgCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 128790 0.79 0.334782
Target:  5'- cCGCuGCGCGcCUCU--UACGCGCUGCCc -3'
miRNA:   3'- -GCG-CGUGUuGAGAuuGUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 37351 0.79 0.341804
Target:  5'- uGCGCGCGgccgcgcGCUCgugcgAACGCGCGC-GCCg -3'
miRNA:   3'- gCGCGUGU-------UGAGa----UUGUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 44155 0.79 0.35053
Target:  5'- aGCGCACGucgucGCUCUccucgauuucGCACGCGCUGaCCg -3'
miRNA:   3'- gCGCGUGU-----UGAGAu---------UGUGCGCGAC-GG- -5'
6735 5' -53.5 NC_001875.2 + 35242 0.79 0.35053
Target:  5'- uGUGCACAAaa--AGCGCGCGCUGCUg -3'
miRNA:   3'- gCGCGUGUUgagaUUGUGCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 10441 0.78 0.383577
Target:  5'- gGCGCAgCAGCUUUGACGCGgCGCgGCg -3'
miRNA:   3'- gCGCGU-GUUGAGAUUGUGC-GCGaCGg -5'
6735 5' -53.5 NC_001875.2 + 39937 0.78 0.400859
Target:  5'- uGCGCGCAAUUU--GCGCGCgGUUGCCc -3'
miRNA:   3'- gCGCGUGUUGAGauUGUGCG-CGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.