miRNA display CGI


Results 21 - 40 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6735 5' -53.5 NC_001875.2 + 26906 0.66 0.954762
Target:  5'- aCGCGCGCgu-UCU-GCugGCGCaggGUCa -3'
miRNA:   3'- -GCGCGUGuugAGAuUGugCGCGa--CGG- -5'
6735 5' -53.5 NC_001875.2 + 3806 0.66 0.954762
Target:  5'- aGCGCGCAGCac--ACACGCcaGCgGCUu -3'
miRNA:   3'- gCGCGUGUUGagauUGUGCG--CGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 74429 0.66 0.954762
Target:  5'- uCGCGCGuaaacCGGCgc-GGCGuCGCGCUGUCc -3'
miRNA:   3'- -GCGCGU-----GUUGagaUUGU-GCGCGACGG- -5'
6735 5' -53.5 NC_001875.2 + 39822 0.66 0.954762
Target:  5'- gGCgGC-CGACUUUGGCACG-GUgUGCCa -3'
miRNA:   3'- gCG-CGuGUUGAGAUUGUGCgCG-ACGG- -5'
6735 5' -53.5 NC_001875.2 + 53940 0.66 0.954762
Target:  5'- gCGCGCACGAUUCUuGgGgGC-CcGCCu -3'
miRNA:   3'- -GCGCGUGUUGAGAuUgUgCGcGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 110313 0.66 0.954762
Target:  5'- gGUGCugGACUgcggcauguuuaUUAGCGCGUuuggGCUGCa -3'
miRNA:   3'- gCGCGugUUGA------------GAUUGUGCG----CGACGg -5'
6735 5' -53.5 NC_001875.2 + 41174 0.66 0.954762
Target:  5'- aCGUGuCGCGACUg-AGCACGaccaCGCgGCCg -3'
miRNA:   3'- -GCGC-GUGUUGAgaUUGUGC----GCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 76263 0.66 0.954762
Target:  5'- uGCGcCACAaaauccagacuGCUUUuuuCGCGCGUaGCCa -3'
miRNA:   3'- gCGC-GUGU-----------UGAGAuu-GUGCGCGaCGG- -5'
6735 5' -53.5 NC_001875.2 + 62258 0.66 0.954762
Target:  5'- aGCGcCACAcguACUCcGACACcuGCGUaucgGCCa -3'
miRNA:   3'- gCGC-GUGU---UGAGaUUGUG--CGCGa---CGG- -5'
6735 5' -53.5 NC_001875.2 + 124706 0.66 0.954762
Target:  5'- aCGUGCggugaaGCAACa--GGCACGCGUcgGCCg -3'
miRNA:   3'- -GCGCG------UGUUGagaUUGUGCGCGa-CGG- -5'
6735 5' -53.5 NC_001875.2 + 94964 0.66 0.954762
Target:  5'- uGaCGCACAugaagCUGACguGCGUGCUGUg -3'
miRNA:   3'- gC-GCGUGUuga--GAUUG--UGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 49855 0.66 0.954762
Target:  5'- gCGCGC-CGGC-C-GGCGCGCcUUGCCg -3'
miRNA:   3'- -GCGCGuGUUGaGaUUGUGCGcGACGG- -5'
6735 5' -53.5 NC_001875.2 + 31838 0.66 0.954762
Target:  5'- uGCGCuguuuuuguuugACAACUUUAAauCGCGCGUggacuggcGCCg -3'
miRNA:   3'- gCGCG------------UGUUGAGAUU--GUGCGCGa-------CGG- -5'
6735 5' -53.5 NC_001875.2 + 61991 0.66 0.954762
Target:  5'- uGCGCgGCGAC---AugACGCGUUGCa -3'
miRNA:   3'- gCGCG-UGUUGagaUugUGCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 44419 0.66 0.954762
Target:  5'- gGUGCGCA---UUGGCGCGC-CUGUCa -3'
miRNA:   3'- gCGCGUGUugaGAUUGUGCGcGACGG- -5'
6735 5' -53.5 NC_001875.2 + 102157 0.66 0.954762
Target:  5'- gGUGUACAGCUCg--UugGCGUU-CCa -3'
miRNA:   3'- gCGCGUGUUGAGauuGugCGCGAcGG- -5'
6735 5' -53.5 NC_001875.2 + 32198 0.66 0.95436
Target:  5'- gCGCGCGCAcGCUCaUGuuuauggguaucaGCAguucgcagUGCGCUGCg -3'
miRNA:   3'- -GCGCGUGU-UGAG-AU-------------UGU--------GCGCGACGg -5'
6735 5' -53.5 NC_001875.2 + 52733 0.66 0.952319
Target:  5'- gGCGCGCguggagacgaugucaAugUCUGugGCGCGCg--- -3'
miRNA:   3'- gCGCGUG---------------UugAGAUugUGCGCGacgg -5'
6735 5' -53.5 NC_001875.2 + 29553 0.66 0.951065
Target:  5'- gGCGCGCcaauuGCUCgggagcucauucugcAACGCGCGCgagcGCUc -3'
miRNA:   3'- gCGCGUGu----UGAGa--------------UUGUGCGCGa---CGG- -5'
6735 5' -53.5 NC_001875.2 + 72576 0.66 0.950642
Target:  5'- gCGgGCGCuGCggguGCGgGCGCUGCg -3'
miRNA:   3'- -GCgCGUGuUGagauUGUgCGCGACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.