miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 94636 0.68 0.944309
Target:  5'- uGCACcgcUGC-GCCAGGCuuuCCUCGa -3'
miRNA:   3'- -CGUGaa-AUGcCGGUCCGuuuGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 53432 0.68 0.944309
Target:  5'- aGCGCgcacACGGCCAGcGCGugcAGCaCUgCGGg -3'
miRNA:   3'- -CGUGaaa-UGCCGGUC-CGU---UUG-GA-GCC- -5'
6736 3' -51.8 NC_001875.2 + 13529 0.68 0.944309
Target:  5'- aGCGC---GCGGCC-GGCc-GCCUCGa -3'
miRNA:   3'- -CGUGaaaUGCCGGuCCGuuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 82157 0.68 0.944309
Target:  5'- cCGCUUUGCuGGCCgacGGGCGguacgugcgcAACCgccgCGGg -3'
miRNA:   3'- cGUGAAAUG-CCGG---UCCGU----------UUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 68123 0.68 0.944309
Target:  5'- aGCGCguccagUUcCGGCgAGGCAAucacgcgcACCUCGu -3'
miRNA:   3'- -CGUGa-----AAuGCCGgUCCGUU--------UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 41132 0.68 0.93956
Target:  5'- cGCGCUUgaccgGCGGCCGcgccGGCAAcCCcaUCGu -3'
miRNA:   3'- -CGUGAAa----UGCCGGU----CCGUUuGG--AGCc -5'
6736 3' -51.8 NC_001875.2 + 110252 0.68 0.93956
Target:  5'- aGCugUUcgaACGGCUGGGCcggcuGGCCgCGGa -3'
miRNA:   3'- -CGugAAa--UGCCGGUCCGu----UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 121458 0.68 0.938086
Target:  5'- gGCGCggcggcguucaaagUUUuCGGCCAGGCcguAGCC-CGGc -3'
miRNA:   3'- -CGUG--------------AAAuGCCGGUCCGu--UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 31557 0.69 0.934559
Target:  5'- cGCGCUgcaggUugGGCCcGGCGGcuuCCUUGc -3'
miRNA:   3'- -CGUGAa----AugCCGGuCCGUUu--GGAGCc -5'
6736 3' -51.8 NC_001875.2 + 19942 0.69 0.934044
Target:  5'- aCACggaGCGGCCGGcGCGAcgguccggccggcGCCUCGc -3'
miRNA:   3'- cGUGaaaUGCCGGUC-CGUU-------------UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 47667 0.69 0.929303
Target:  5'- cGCACggacGCGGCCGcGGCGcGCCgcgCGu -3'
miRNA:   3'- -CGUGaaa-UGCCGGU-CCGUuUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 89339 0.69 0.918026
Target:  5'- -aGCUUUGCGGCgCAcGCGGACgaCGGc -3'
miRNA:   3'- cgUGAAAUGCCG-GUcCGUUUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 113889 0.69 0.918026
Target:  5'- cGCGCUggcUGGCCGGGCAcAAaaaCUCGu -3'
miRNA:   3'- -CGUGAaauGCCGGUCCGU-UUg--GAGCc -5'
6736 3' -51.8 NC_001875.2 + 110894 0.69 0.918026
Target:  5'- uGCGCUggACGGCCcgcGGGCGuuugagcuGGCCaUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGG---UCCGU--------UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 54365 0.7 0.905733
Target:  5'- gGCGCg-UugGGCgAGcGCAcGCCUUGGu -3'
miRNA:   3'- -CGUGaaAugCCGgUC-CGUuUGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 96139 0.7 0.899209
Target:  5'- aCGCgaUGCGGCCcaacccgcAGGUGGACCUCa- -3'
miRNA:   3'- cGUGaaAUGCCGG--------UCCGUUUGGAGcc -5'
6736 3' -51.8 NC_001875.2 + 85295 0.7 0.885424
Target:  5'- uGCGCgg-GCGGCgCGGGCGcgggcauuGCCgCGGg -3'
miRNA:   3'- -CGUGaaaUGCCG-GUCCGUu-------UGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 122133 0.71 0.862968
Target:  5'- gGCGCggcGCGGCCGgcgcgcacgacGGCGAGCCccaaCGGa -3'
miRNA:   3'- -CGUGaaaUGCCGGU-----------CCGUUUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 17083 0.71 0.85503
Target:  5'- -aGCUggucaGGCCGGGCAAGCCgcgCGc -3'
miRNA:   3'- cgUGAaaug-CCGGUCCGUUUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 23172 0.71 0.846876
Target:  5'- gGCACg--GCGGCUgcGGGCAcGGCCguuggCGGu -3'
miRNA:   3'- -CGUGaaaUGCCGG--UCCGU-UUGGa----GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.