miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 65768 0.67 0.97074
Target:  5'- aGC-Cg--GCGGCUGGGCGAGCaCgcgcgCGGc -3'
miRNA:   3'- -CGuGaaaUGCCGGUCCGUUUG-Ga----GCC- -5'
6736 3' -51.8 NC_001875.2 + 112839 0.67 0.97074
Target:  5'- aGCGCgUUGCGGCCuGcGCGcacuGCCgUGGa -3'
miRNA:   3'- -CGUGaAAUGCCGGuC-CGUu---UGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 53532 0.67 0.97074
Target:  5'- cGCACgucgUGCGcuaCCAGcGCGAGCCgcaaaCGGg -3'
miRNA:   3'- -CGUGaa--AUGCc--GGUC-CGUUUGGa----GCC- -5'
6736 3' -51.8 NC_001875.2 + 122511 0.67 0.97074
Target:  5'- gGCGacaucCGGCCGGGCA-GCUUCGc -3'
miRNA:   3'- -CGUgaaauGCCGGUCCGUuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 100594 0.67 0.967661
Target:  5'- cGUACgcg--GGCCGGGCGccGGCCgCGGc -3'
miRNA:   3'- -CGUGaaaugCCGGUCCGU--UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 63130 0.67 0.967661
Target:  5'- ------aGCGGCCGGGCGcgcGGCCggcgcaCGGg -3'
miRNA:   3'- cgugaaaUGCCGGUCCGU---UUGGa-----GCC- -5'
6736 3' -51.8 NC_001875.2 + 105908 0.67 0.967661
Target:  5'- gGCGCg--GCGGCCAccaCGAAaaaCUCGGg -3'
miRNA:   3'- -CGUGaaaUGCCGGUcc-GUUUg--GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 96607 0.67 0.967661
Target:  5'- cGCGCUUUuugugcacaaucGCGGCCAGGUcgGuuUCc- -3'
miRNA:   3'- -CGUGAAA------------UGCCGGUCCGuuUggAGcc -5'
6736 3' -51.8 NC_001875.2 + 66723 0.67 0.967661
Target:  5'- uGUACUgcACGGCgAGGCuGAGCugCUUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGgUCCG-UUUG--GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 65450 0.67 0.967341
Target:  5'- gGCGgUcgGUGGCCAGGUcgaacacgugcucGAACCUCGa -3'
miRNA:   3'- -CGUgAaaUGCCGGUCCG-------------UUUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 2759 0.67 0.964359
Target:  5'- gGCGCca-GCGGCUgcucccGGGCAGGCUguaaaucuUCGGg -3'
miRNA:   3'- -CGUGaaaUGCCGG------UCCGUUUGG--------AGCC- -5'
6736 3' -51.8 NC_001875.2 + 35508 0.67 0.964359
Target:  5'- cGUAUUUUGCGGCCAaGUAugacgcGGCCaCGGu -3'
miRNA:   3'- -CGUGAAAUGCCGGUcCGU------UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 39656 0.67 0.960828
Target:  5'- cGCGCgagUUugGGCCGgcGGCGcGCggCGGc -3'
miRNA:   3'- -CGUGa--AAugCCGGU--CCGUuUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 70968 0.67 0.960461
Target:  5'- -aAUUggACGGCCGGGCcguccacGAGCCU-GGa -3'
miRNA:   3'- cgUGAaaUGCCGGUCCG-------UUUGGAgCC- -5'
6736 3' -51.8 NC_001875.2 + 61604 0.67 0.95935
Target:  5'- gGCGCcg-GCGGCgcuuCGGGCugugucggcggcGCCUCGGg -3'
miRNA:   3'- -CGUGaaaUGCCG----GUCCGuu----------UGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 97124 0.68 0.958597
Target:  5'- uGCACgcugccaaacuCGGCUAuGGCGAACCcgUUGGg -3'
miRNA:   3'- -CGUGaaau-------GCCGGU-CCGUUUGG--AGCC- -5'
6736 3' -51.8 NC_001875.2 + 91187 0.68 0.953056
Target:  5'- gGCGCUUgcguguuguUGGUCGGGUccGCCUCGu -3'
miRNA:   3'- -CGUGAAau-------GCCGGUCCGuuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 3101 0.68 0.953056
Target:  5'- cGCGCcggggcGCGGCUcgcGGcGCAGACCUgGGc -3'
miRNA:   3'- -CGUGaaa---UGCCGG---UC-CGUUUGGAgCC- -5'
6736 3' -51.8 NC_001875.2 + 54594 0.68 0.948806
Target:  5'- cGCuGCUUUGCgcgaGGCUGGGCGAAgaUUCGGu -3'
miRNA:   3'- -CG-UGAAAUG----CCGGUCCGUUUg-GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 53432 0.68 0.944309
Target:  5'- aGCGCgcacACGGCCAGcGCGugcAGCaCUgCGGg -3'
miRNA:   3'- -CGUGaaa-UGCCGGUC-CGU---UUG-GA-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.