miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 43818 0.66 0.984947
Target:  5'- -gGCUUUGcCGGCUAGcGCAAGCUUg-- -3'
miRNA:   3'- cgUGAAAU-GCCGGUC-CGUUUGGAgcc -5'
6736 3' -51.8 NC_001875.2 + 45130 0.66 0.978711
Target:  5'- aGCAgUgu-CGGCCGGGCGgcaaAAUUUCGu -3'
miRNA:   3'- -CGUgAaauGCCGGUCCGU----UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 47667 0.69 0.929303
Target:  5'- cGCACggacGCGGCCGcGGCGcGCCgcgCGu -3'
miRNA:   3'- -CGUGaaa-UGCCGGU-CCGUuUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 49854 0.66 0.980971
Target:  5'- uGCGCgc--CGGCC-GGCGcGCCUUGc -3'
miRNA:   3'- -CGUGaaauGCCGGuCCGUuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 53001 0.75 0.645852
Target:  5'- uGCACUUUGCGGCCAGccugucggugcccaCGGACUaCGGg -3'
miRNA:   3'- -CGUGAAAUGCCGGUCc-------------GUUUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 53432 0.68 0.944309
Target:  5'- aGCGCgcacACGGCCAGcGCGugcAGCaCUgCGGg -3'
miRNA:   3'- -CGUGaaa-UGCCGGUC-CGU---UUG-GA-GCC- -5'
6736 3' -51.8 NC_001875.2 + 53532 0.67 0.97074
Target:  5'- cGCACgucgUGCGcuaCCAGcGCGAGCCgcaaaCGGg -3'
miRNA:   3'- -CGUGaa--AUGCc--GGUC-CGUUUGGa----GCC- -5'
6736 3' -51.8 NC_001875.2 + 54365 0.7 0.905733
Target:  5'- gGCGCg-UugGGCgAGcGCAcGCCUUGGu -3'
miRNA:   3'- -CGUGaaAugCCGgUC-CGUuUGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 54594 0.68 0.948806
Target:  5'- cGCuGCUUUGCgcgaGGCUGGGCGAAgaUUCGGu -3'
miRNA:   3'- -CG-UGAAAUG----CCGGUCCGUUUg-GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 55083 0.66 0.976257
Target:  5'- aGCACU---CGGCCAGcGCGu-CCUUGu -3'
miRNA:   3'- -CGUGAaauGCCGGUC-CGUuuGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 55723 0.66 0.982848
Target:  5'- cGCGCaaaUACGGCCGagcguggccaugcGGCccuCUUCGGg -3'
miRNA:   3'- -CGUGaa-AUGCCGGU-------------CCGuuuGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 61604 0.67 0.95935
Target:  5'- gGCGCcg-GCGGCgcuuCGGGCugugucggcggcGCCUCGGg -3'
miRNA:   3'- -CGUGaaaUGCCG----GUCCGuu----------UGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 63130 0.67 0.967661
Target:  5'- ------aGCGGCCGGGCGcgcGGCCggcgcaCGGg -3'
miRNA:   3'- cgugaaaUGCCGGUCCGU---UUGGa-----GCC- -5'
6736 3' -51.8 NC_001875.2 + 64244 0.75 0.662737
Target:  5'- -aGCUUUAUGGCUGGGCAggUCguuugCGGc -3'
miRNA:   3'- cgUGAAAUGCCGGUCCGUuuGGa----GCC- -5'
6736 3' -51.8 NC_001875.2 + 65096 0.72 0.829953
Target:  5'- cGCGCUcaacgagGCGGCCAaGCAgcucAGCCUCGc -3'
miRNA:   3'- -CGUGAaa-----UGCCGGUcCGU----UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 65450 0.67 0.967341
Target:  5'- gGCGgUcgGUGGCCAGGUcgaacacgugcucGAACCUCGa -3'
miRNA:   3'- -CGUgAaaUGCCGGUCCG-------------UUUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 65768 0.67 0.97074
Target:  5'- aGC-Cg--GCGGCUGGGCGAGCaCgcgcgCGGc -3'
miRNA:   3'- -CGuGaaaUGCCGGUCCGUUUG-Ga----GCC- -5'
6736 3' -51.8 NC_001875.2 + 66111 0.73 0.774864
Target:  5'- cGCGCggcggGCGGCgAGGCGGcgccGCCcgCGGa -3'
miRNA:   3'- -CGUGaaa--UGCCGgUCCGUU----UGGa-GCC- -5'
6736 3' -51.8 NC_001875.2 + 66723 0.67 0.967661
Target:  5'- uGUACUgcACGGCgAGGCuGAGCugCUUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGgUCCG-UUUG--GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 68123 0.68 0.944309
Target:  5'- aGCGCguccagUUcCGGCgAGGCAAucacgcgcACCUCGu -3'
miRNA:   3'- -CGUGa-----AAuGCCGgUCCGUU--------UGGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.