miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 110894 0.69 0.918026
Target:  5'- uGCGCUggACGGCCcgcGGGCGuuugagcuGGCCaUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGG---UCCGU--------UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 47667 0.69 0.929303
Target:  5'- cGCACggacGCGGCCGcGGCGcGCCgcgCGu -3'
miRNA:   3'- -CGUGaaa-UGCCGGU-CCGUuUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 19942 0.69 0.934044
Target:  5'- aCACggaGCGGCCGGcGCGAcgguccggccggcGCCUCGc -3'
miRNA:   3'- cGUGaaaUGCCGGUC-CGUU-------------UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 31557 0.69 0.934559
Target:  5'- cGCGCUgcaggUugGGCCcGGCGGcuuCCUUGc -3'
miRNA:   3'- -CGUGAa----AugCCGGuCCGUUu--GGAGCc -5'
6736 3' -51.8 NC_001875.2 + 121458 0.68 0.938086
Target:  5'- gGCGCggcggcguucaaagUUUuCGGCCAGGCcguAGCC-CGGc -3'
miRNA:   3'- -CGUG--------------AAAuGCCGGUCCGu--UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 41132 0.68 0.93956
Target:  5'- cGCGCUUgaccgGCGGCCGcgccGGCAAcCCcaUCGu -3'
miRNA:   3'- -CGUGAAa----UGCCGGU----CCGUUuGG--AGCc -5'
6736 3' -51.8 NC_001875.2 + 110252 0.68 0.93956
Target:  5'- aGCugUUcgaACGGCUGGGCcggcuGGCCgCGGa -3'
miRNA:   3'- -CGugAAa--UGCCGGUCCGu----UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 53432 0.68 0.944309
Target:  5'- aGCGCgcacACGGCCAGcGCGugcAGCaCUgCGGg -3'
miRNA:   3'- -CGUGaaa-UGCCGGUC-CGU---UUG-GA-GCC- -5'
6736 3' -51.8 NC_001875.2 + 94636 0.68 0.944309
Target:  5'- uGCACcgcUGC-GCCAGGCuuuCCUCGa -3'
miRNA:   3'- -CGUGaa-AUGcCGGUCCGuuuGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 31983 0.68 0.944309
Target:  5'- gGCGCgcgUACGGCCGGuuuGUGAGCggCGGc -3'
miRNA:   3'- -CGUGaa-AUGCCGGUC---CGUUUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 68123 0.68 0.944309
Target:  5'- aGCGCguccagUUcCGGCgAGGCAAucacgcgcACCUCGu -3'
miRNA:   3'- -CGUGa-----AAuGCCGgUCCGUU--------UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 82157 0.68 0.944309
Target:  5'- cCGCUUUGCuGGCCgacGGGCGguacgugcgcAACCgccgCGGg -3'
miRNA:   3'- cGUGAAAUG-CCGG---UCCGU----------UUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 13529 0.68 0.944309
Target:  5'- aGCGC---GCGGCC-GGCc-GCCUCGa -3'
miRNA:   3'- -CGUGaaaUGCCGGuCCGuuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 54594 0.68 0.948806
Target:  5'- cGCuGCUUUGCgcgaGGCUGGGCGAAgaUUCGGu -3'
miRNA:   3'- -CG-UGAAAUG----CCGGUCCGUUUg-GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 91187 0.68 0.953056
Target:  5'- gGCGCUUgcguguuguUGGUCGGGUccGCCUCGu -3'
miRNA:   3'- -CGUGAAau-------GCCGGUCCGuuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 3101 0.68 0.953056
Target:  5'- cGCGCcggggcGCGGCUcgcGGcGCAGACCUgGGc -3'
miRNA:   3'- -CGUGaaa---UGCCGG---UC-CGUUUGGAgCC- -5'
6736 3' -51.8 NC_001875.2 + 97124 0.68 0.958597
Target:  5'- uGCACgcugccaaacuCGGCUAuGGCGAACCcgUUGGg -3'
miRNA:   3'- -CGUGaaau-------GCCGGU-CCGUUUGG--AGCC- -5'
6736 3' -51.8 NC_001875.2 + 61604 0.67 0.95935
Target:  5'- gGCGCcg-GCGGCgcuuCGGGCugugucggcggcGCCUCGGg -3'
miRNA:   3'- -CGUGaaaUGCCG----GUCCGuu----------UGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 70968 0.67 0.960461
Target:  5'- -aAUUggACGGCCGGGCcguccacGAGCCU-GGa -3'
miRNA:   3'- cgUGAaaUGCCGGUCCG-------UUUGGAgCC- -5'
6736 3' -51.8 NC_001875.2 + 39656 0.67 0.960828
Target:  5'- cGCGCgagUUugGGCCGgcGGCGcGCggCGGc -3'
miRNA:   3'- -CGUGa--AAugCCGGU--CCGUuUGgaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.