miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 119645 1.12 0.004109
Target:  5'- gGCACUUUACGGCCAGGCAAACCUCGGc -3'
miRNA:   3'- -CGUGAAAUGCCGGUCCGUUUGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 117335 0.78 0.496528
Target:  5'- aCACggcGCGGCgCGGGCGAACCggCGGg -3'
miRNA:   3'- cGUGaaaUGCCG-GUCCGUUUGGa-GCC- -5'
6736 3' -51.8 NC_001875.2 + 53001 0.75 0.645852
Target:  5'- uGCACUUUGCGGCCAGccugucggugcccaCGGACUaCGGg -3'
miRNA:   3'- -CGUGAAAUGCCGGUCc-------------GUUUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 64244 0.75 0.662737
Target:  5'- -aGCUUUAUGGCUGGGCAggUCguuugCGGc -3'
miRNA:   3'- cgUGAAAUGCCGGUCCGUuuGGa----GCC- -5'
6736 3' -51.8 NC_001875.2 + 19480 0.74 0.694183
Target:  5'- gGCGCUggugcugGCGGCuCGGGCAGcuccuCCUCGa -3'
miRNA:   3'- -CGUGAaa-----UGCCG-GUCCGUUu----GGAGCc -5'
6736 3' -51.8 NC_001875.2 + 39157 0.73 0.735289
Target:  5'- cCAUUUUGgGGCCgcgAGGCGGGCCggCGGu -3'
miRNA:   3'- cGUGAAAUgCCGG---UCCGUUUGGa-GCC- -5'
6736 3' -51.8 NC_001875.2 + 72619 0.73 0.745351
Target:  5'- gGUugUUUACGGCCugcGGCAcGCCaaaCGGc -3'
miRNA:   3'- -CGugAAAUGCCGGu--CCGUuUGGa--GCC- -5'
6736 3' -51.8 NC_001875.2 + 66111 0.73 0.774864
Target:  5'- cGCGCggcggGCGGCgAGGCGGcgccGCCcgCGGa -3'
miRNA:   3'- -CGUGaaa--UGCCGgUCCGUU----UGGa-GCC- -5'
6736 3' -51.8 NC_001875.2 + 42106 0.72 0.81136
Target:  5'- aCACUcgUACGGCCGGcGCAguccgcuGAUCUCGa -3'
miRNA:   3'- cGUGAa-AUGCCGGUC-CGU-------UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 65096 0.72 0.829953
Target:  5'- cGCGCUcaacgagGCGGCCAaGCAgcucAGCCUCGc -3'
miRNA:   3'- -CGUGAaa-----UGCCGGUcCGU----UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 124697 0.71 0.837668
Target:  5'- cGCGCUggcacgUGCGGUgaagcaaCAGGCAcGCgUCGGc -3'
miRNA:   3'- -CGUGAa-----AUGCCG-------GUCCGUuUGgAGCC- -5'
6736 3' -51.8 NC_001875.2 + 2666 0.71 0.84605
Target:  5'- gGCGCcg-GCGGCgCcugGGGCAAcugcggcGCCUCGGc -3'
miRNA:   3'- -CGUGaaaUGCCG-G---UCCGUU-------UGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 23172 0.71 0.846876
Target:  5'- gGCACg--GCGGCUgcGGGCAcGGCCguuggCGGu -3'
miRNA:   3'- -CGUGaaaUGCCGG--UCCGU-UUGGa----GCC- -5'
6736 3' -51.8 NC_001875.2 + 17083 0.71 0.85503
Target:  5'- -aGCUggucaGGCCGGGCAAGCCgcgCGc -3'
miRNA:   3'- cgUGAaaug-CCGGUCCGUUUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 122133 0.71 0.862968
Target:  5'- gGCGCggcGCGGCCGgcgcgcacgacGGCGAGCCccaaCGGa -3'
miRNA:   3'- -CGUGaaaUGCCGGU-----------CCGUUUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 85295 0.7 0.885424
Target:  5'- uGCGCgg-GCGGCgCGGGCGcgggcauuGCCgCGGg -3'
miRNA:   3'- -CGUGaaaUGCCG-GUCCGUu-------UGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 96139 0.7 0.899209
Target:  5'- aCGCgaUGCGGCCcaacccgcAGGUGGACCUCa- -3'
miRNA:   3'- cGUGaaAUGCCGG--------UCCGUUUGGAGcc -5'
6736 3' -51.8 NC_001875.2 + 54365 0.7 0.905733
Target:  5'- gGCGCg-UugGGCgAGcGCAcGCCUUGGu -3'
miRNA:   3'- -CGUGaaAugCCGgUC-CGUuUGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 89339 0.69 0.918026
Target:  5'- -aGCUUUGCGGCgCAcGCGGACgaCGGc -3'
miRNA:   3'- cgUGAAAUGCCG-GUcCGUUUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 110894 0.69 0.918026
Target:  5'- uGCGCUggACGGCCcgcGGGCGuuugagcuGGCCaUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGG---UCCGU--------UUGGaGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.