miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 289 0.66 0.980971
Target:  5'- cGCAUgc--UGGCCAGGUccagcACCUCGu -3'
miRNA:   3'- -CGUGaaauGCCGGUCCGuu---UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 2666 0.71 0.84605
Target:  5'- gGCGCcg-GCGGCgCcugGGGCAAcugcggcGCCUCGGc -3'
miRNA:   3'- -CGUGaaaUGCCG-G---UCCGUU-------UGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 2759 0.67 0.964359
Target:  5'- gGCGCca-GCGGCUgcucccGGGCAGGCUguaaaucuUCGGg -3'
miRNA:   3'- -CGUGaaaUGCCGG------UCCGUUUGG--------AGCC- -5'
6736 3' -51.8 NC_001875.2 + 3101 0.68 0.953056
Target:  5'- cGCGCcggggcGCGGCUcgcGGcGCAGACCUgGGc -3'
miRNA:   3'- -CGUGaaa---UGCCGG---UC-CGUUUGGAgCC- -5'
6736 3' -51.8 NC_001875.2 + 4452 0.66 0.983047
Target:  5'- aGCACUU--UGGCCAGGCucugagcGCCguccgCGc -3'
miRNA:   3'- -CGUGAAauGCCGGUCCGuu-----UGGa----GCc -5'
6736 3' -51.8 NC_001875.2 + 7047 0.66 0.983047
Target:  5'- cGCGCUUguCGGCCuGGUu--CCgcugCGGc -3'
miRNA:   3'- -CGUGAAauGCCGGuCCGuuuGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 13529 0.68 0.944309
Target:  5'- aGCGC---GCGGCC-GGCc-GCCUCGa -3'
miRNA:   3'- -CGUGaaaUGCCGGuCCGuuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 17083 0.71 0.85503
Target:  5'- -aGCUggucaGGCCGGGCAAGCCgcgCGc -3'
miRNA:   3'- cgUGAaaug-CCGGUCCGUUUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 19480 0.74 0.694183
Target:  5'- gGCGCUggugcugGCGGCuCGGGCAGcuccuCCUCGa -3'
miRNA:   3'- -CGUGAaa-----UGCCG-GUCCGUUu----GGAGCc -5'
6736 3' -51.8 NC_001875.2 + 19942 0.69 0.934044
Target:  5'- aCACggaGCGGCCGGcGCGAcgguccggccggcGCCUCGc -3'
miRNA:   3'- cGUGaaaUGCCGGUC-CGUU-------------UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 21575 0.67 0.973603
Target:  5'- cGCGCUccGCGGCCAgccGGCccAGCCguUCGa -3'
miRNA:   3'- -CGUGAaaUGCCGGU---CCGu-UUGG--AGCc -5'
6736 3' -51.8 NC_001875.2 + 23172 0.71 0.846876
Target:  5'- gGCACg--GCGGCUgcGGGCAcGGCCguuggCGGu -3'
miRNA:   3'- -CGUGaaaUGCCGG--UCCGU-UUGGa----GCC- -5'
6736 3' -51.8 NC_001875.2 + 29199 0.67 0.973603
Target:  5'- gGCaACUUUggccaguugaugGCGGCCAagcuGGCAAACC-CGc -3'
miRNA:   3'- -CG-UGAAA------------UGCCGGU----CCGUUUGGaGCc -5'
6736 3' -51.8 NC_001875.2 + 31557 0.69 0.934559
Target:  5'- cGCGCUgcaggUugGGCCcGGCGGcuuCCUUGc -3'
miRNA:   3'- -CGUGAa----AugCCGGuCCGUUu--GGAGCc -5'
6736 3' -51.8 NC_001875.2 + 31983 0.68 0.944309
Target:  5'- gGCGCgcgUACGGCCGGuuuGUGAGCggCGGc -3'
miRNA:   3'- -CGUGaa-AUGCCGGUC---CGUUUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 35508 0.67 0.964359
Target:  5'- cGUAUUUUGCGGCCAaGUAugacgcGGCCaCGGu -3'
miRNA:   3'- -CGUGAAAUGCCGGUcCGU------UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 39157 0.73 0.735289
Target:  5'- cCAUUUUGgGGCCgcgAGGCGGGCCggCGGu -3'
miRNA:   3'- cGUGAAAUgCCGG---UCCGUUUGGa-GCC- -5'
6736 3' -51.8 NC_001875.2 + 39656 0.67 0.960828
Target:  5'- cGCGCgagUUugGGCCGgcGGCGcGCggCGGc -3'
miRNA:   3'- -CGUGa--AAugCCGGU--CCGUuUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 41132 0.68 0.93956
Target:  5'- cGCGCUUgaccgGCGGCCGcgccGGCAAcCCcaUCGu -3'
miRNA:   3'- -CGUGAAa----UGCCGGU----CCGUUuGG--AGCc -5'
6736 3' -51.8 NC_001875.2 + 42106 0.72 0.81136
Target:  5'- aCACUcgUACGGCCGGcGCAguccgcuGAUCUCGa -3'
miRNA:   3'- cGUGAa-AUGCCGGUC-CGU-------UUGGAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.