Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6736 | 3' | -51.8 | NC_001875.2 | + | 126310 | 0.66 | 0.983047 |
Target: 5'- cGCGCgccucaacgGCGGCCGGcGUAAACUgcgCGc -3' miRNA: 3'- -CGUGaaa------UGCCGGUC-CGUUUGGa--GCc -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 124697 | 0.71 | 0.837668 |
Target: 5'- cGCGCUggcacgUGCGGUgaagcaaCAGGCAcGCgUCGGc -3' miRNA: 3'- -CGUGAa-----AUGCCG-------GUCCGUuUGgAGCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 122511 | 0.67 | 0.97074 |
Target: 5'- gGCGacaucCGGCCGGGCA-GCUUCGc -3' miRNA: 3'- -CGUgaaauGCCGGUCCGUuUGGAGCc -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 122133 | 0.71 | 0.862968 |
Target: 5'- gGCGCggcGCGGCCGgcgcgcacgacGGCGAGCCccaaCGGa -3' miRNA: 3'- -CGUGaaaUGCCGGU-----------CCGUUUGGa---GCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 121458 | 0.68 | 0.938086 |
Target: 5'- gGCGCggcggcguucaaagUUUuCGGCCAGGCcguAGCC-CGGc -3' miRNA: 3'- -CGUG--------------AAAuGCCGGUCCGu--UUGGaGCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 119645 | 1.12 | 0.004109 |
Target: 5'- gGCACUUUACGGCCAGGCAAACCUCGGc -3' miRNA: 3'- -CGUGAAAUGCCGGUCCGUUUGGAGCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 119329 | 0.66 | 0.980971 |
Target: 5'- cGCACU--GCGccCCAGGCGcuuuguaaauaAGCCUCGu -3' miRNA: 3'- -CGUGAaaUGCc-GGUCCGU-----------UUGGAGCc -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 117335 | 0.78 | 0.496528 |
Target: 5'- aCACggcGCGGCgCGGGCGAACCggCGGg -3' miRNA: 3'- cGUGaaaUGCCG-GUCCGUUUGGa-GCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 115683 | 0.66 | 0.984947 |
Target: 5'- uGCACacgUugGG-CAGGCAuuCCagGGg -3' miRNA: 3'- -CGUGaa-AugCCgGUCCGUuuGGagCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 113889 | 0.69 | 0.918026 |
Target: 5'- cGCGCUggcUGGCCGGGCAcAAaaaCUCGu -3' miRNA: 3'- -CGUGAaauGCCGGUCCGU-UUg--GAGCc -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 112839 | 0.67 | 0.97074 |
Target: 5'- aGCGCgUUGCGGCCuGcGCGcacuGCCgUGGa -3' miRNA: 3'- -CGUGaAAUGCCGGuC-CGUu---UGGaGCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 111868 | 0.66 | 0.983047 |
Target: 5'- cGCACgucagcaACGGCgAGGC--GCCggcCGGa -3' miRNA: 3'- -CGUGaaa----UGCCGgUCCGuuUGGa--GCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 110894 | 0.69 | 0.918026 |
Target: 5'- uGCGCUggACGGCCcgcGGGCGuuugagcuGGCCaUGGc -3' miRNA: 3'- -CGUGAaaUGCCGG---UCCGU--------UUGGaGCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 110252 | 0.68 | 0.93956 |
Target: 5'- aGCugUUcgaACGGCUGGGCcggcuGGCCgCGGa -3' miRNA: 3'- -CGugAAa--UGCCGGUCCGu----UUGGaGCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 105908 | 0.67 | 0.967661 |
Target: 5'- gGCGCg--GCGGCCAccaCGAAaaaCUCGGg -3' miRNA: 3'- -CGUGaaaUGCCGGUcc-GUUUg--GAGCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 100594 | 0.67 | 0.967661 |
Target: 5'- cGUACgcg--GGCCGGGCGccGGCCgCGGc -3' miRNA: 3'- -CGUGaaaugCCGGUCCGU--UUGGaGCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 97194 | 0.66 | 0.976257 |
Target: 5'- uGCACUUgcccacgGCGGCCuccaugauGCAcaccuuguCCUCGGg -3' miRNA: 3'- -CGUGAAa------UGCCGGuc------CGUuu------GGAGCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 97124 | 0.68 | 0.958597 |
Target: 5'- uGCACgcugccaaacuCGGCUAuGGCGAACCcgUUGGg -3' miRNA: 3'- -CGUGaaau-------GCCGGU-CCGUUUGG--AGCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 96757 | 0.66 | 0.986681 |
Target: 5'- cGUACUUgacgccgucgaUGCGGCC--GCAAACCagcaCGGg -3' miRNA: 3'- -CGUGAA-----------AUGCCGGucCGUUUGGa---GCC- -5' |
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6736 | 3' | -51.8 | NC_001875.2 | + | 96607 | 0.67 | 0.967661 |
Target: 5'- cGCGCUUUuugugcacaaucGCGGCCAGGUcgGuuUCc- -3' miRNA: 3'- -CGUGAAA------------UGCCGGUCCGuuUggAGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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