miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 66723 0.67 0.967661
Target:  5'- uGUACUgcACGGCgAGGCuGAGCugCUUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGgUCCG-UUUG--GAGCC- -5'
6736 3' -51.8 NC_001875.2 + 110252 0.68 0.93956
Target:  5'- aGCugUUcgaACGGCUGGGCcggcuGGCCgCGGa -3'
miRNA:   3'- -CGugAAa--UGCCGGUCCGu----UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 53432 0.68 0.944309
Target:  5'- aGCGCgcacACGGCCAGcGCGugcAGCaCUgCGGg -3'
miRNA:   3'- -CGUGaaa-UGCCGGUC-CGU---UUG-GA-GCC- -5'
6736 3' -51.8 NC_001875.2 + 31983 0.68 0.944309
Target:  5'- gGCGCgcgUACGGCCGGuuuGUGAGCggCGGc -3'
miRNA:   3'- -CGUGaa-AUGCCGGUC---CGUUUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 68123 0.68 0.944309
Target:  5'- aGCGCguccagUUcCGGCgAGGCAAucacgcgcACCUCGu -3'
miRNA:   3'- -CGUGa-----AAuGCCGgUCCGUU--------UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 82157 0.68 0.944309
Target:  5'- cCGCUUUGCuGGCCgacGGGCGguacgugcgcAACCgccgCGGg -3'
miRNA:   3'- cGUGAAAUG-CCGG---UCCGU----------UUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 39656 0.67 0.960828
Target:  5'- cGCGCgagUUugGGCCGgcGGCGcGCggCGGc -3'
miRNA:   3'- -CGUGa--AAugCCGGU--CCGUuUGgaGCC- -5'
6736 3' -51.8 NC_001875.2 + 35508 0.67 0.964359
Target:  5'- cGUAUUUUGCGGCCAaGUAugacgcGGCCaCGGu -3'
miRNA:   3'- -CGUGAAAUGCCGGUcCGU------UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 65450 0.67 0.967341
Target:  5'- gGCGgUcgGUGGCCAGGUcgaacacgugcucGAACCUCGa -3'
miRNA:   3'- -CGUgAaaUGCCGGUCCG-------------UUUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 47667 0.69 0.929303
Target:  5'- cGCACggacGCGGCCGcGGCGcGCCgcgCGu -3'
miRNA:   3'- -CGUGaaa-UGCCGGU-CCGUuUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 110894 0.69 0.918026
Target:  5'- uGCGCUggACGGCCcgcGGGCGuuugagcuGGCCaUGGc -3'
miRNA:   3'- -CGUGAaaUGCCGG---UCCGU--------UUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 96139 0.7 0.899209
Target:  5'- aCGCgaUGCGGCCcaacccgcAGGUGGACCUCa- -3'
miRNA:   3'- cGUGaaAUGCCGG--------UCCGUUUGGAGcc -5'
6736 3' -51.8 NC_001875.2 + 64244 0.75 0.662737
Target:  5'- -aGCUUUAUGGCUGGGCAggUCguuugCGGc -3'
miRNA:   3'- cgUGAAAUGCCGGUCCGUuuGGa----GCC- -5'
6736 3' -51.8 NC_001875.2 + 39157 0.73 0.735289
Target:  5'- cCAUUUUGgGGCCgcgAGGCGGGCCggCGGu -3'
miRNA:   3'- cGUGAAAUgCCGG---UCCGUUUGGa-GCC- -5'
6736 3' -51.8 NC_001875.2 + 72619 0.73 0.745351
Target:  5'- gGUugUUUACGGCCugcGGCAcGCCaaaCGGc -3'
miRNA:   3'- -CGugAAAUGCCGGu--CCGUuUGGa--GCC- -5'
6736 3' -51.8 NC_001875.2 + 42106 0.72 0.81136
Target:  5'- aCACUcgUACGGCCGGcGCAguccgcuGAUCUCGa -3'
miRNA:   3'- cGUGAa-AUGCCGGUC-CGU-------UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 124697 0.71 0.837668
Target:  5'- cGCGCUggcacgUGCGGUgaagcaaCAGGCAcGCgUCGGc -3'
miRNA:   3'- -CGUGAa-----AUGCCG-------GUCCGUuUGgAGCC- -5'
6736 3' -51.8 NC_001875.2 + 17083 0.71 0.85503
Target:  5'- -aGCUggucaGGCCGGGCAAGCCgcgCGc -3'
miRNA:   3'- cgUGAaaug-CCGGUCCGUUUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 122133 0.71 0.862968
Target:  5'- gGCGCggcGCGGCCGgcgcgcacgacGGCGAGCCccaaCGGa -3'
miRNA:   3'- -CGUGaaaUGCCGGU-----------CCGUUUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 85295 0.7 0.885424
Target:  5'- uGCGCgg-GCGGCgCGGGCGcgggcauuGCCgCGGg -3'
miRNA:   3'- -CGUGaaaUGCCG-GUCCGUu-------UGGaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.