miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 5' -55.8 NC_001875.2 + 12159 0.67 0.830471
Target:  5'- -cCAGCGcUUUCGGCUGAAGcCGCUGu -3'
miRNA:   3'- guGUCGCcGAAGUCGGCUUUcGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 88940 0.67 0.829613
Target:  5'- gGCAuGCGGCUgcaCAGCCucGAcguugaacgcguuGCGCUGg -3'
miRNA:   3'- gUGU-CGCCGAa--GUCGGcuUU-------------CGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 98942 0.67 0.821805
Target:  5'- gCGCGacGCGcGCguguUCAGCCGuuugcAGCGCUGc -3'
miRNA:   3'- -GUGU--CGC-CGa---AGUCGGCuu---UCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 29932 0.67 0.821805
Target:  5'- gACaAGgGGCcgcccaggCAGCCGAAggcgacGGCGCUGu -3'
miRNA:   3'- gUG-UCgCCGaa------GUCGGCUU------UCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 43600 0.67 0.821805
Target:  5'- gGCAGCGGCggcgCGcGCCGcuuGCGCc- -3'
miRNA:   3'- gUGUCGCCGaa--GU-CGGCuuuCGCGac -5'
6736 5' -55.8 NC_001875.2 + 68189 0.67 0.821805
Target:  5'- aCACGGUGGacgguCUUCGGCUGAAAcccGCGUa- -3'
miRNA:   3'- -GUGUCGCC-----GAAGUCGGCUUU---CGCGac -5'
6736 5' -55.8 NC_001875.2 + 60212 0.67 0.821805
Target:  5'- -cCGGCGGCagauugaagCGGCCGAGcucGCGCUu -3'
miRNA:   3'- guGUCGCCGaa-------GUCGGCUUu--CGCGAc -5'
6736 5' -55.8 NC_001875.2 + 65780 0.67 0.80394
Target:  5'- gGCGGCGGCgcgUC-GUCGuuGAGCGCc- -3'
miRNA:   3'- gUGUCGCCGa--AGuCGGCu-UUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 75270 0.67 0.794757
Target:  5'- gGCGGCGGCgUCGGC-GAuGGCGUc- -3'
miRNA:   3'- gUGUCGCCGaAGUCGgCUuUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 39653 0.67 0.794757
Target:  5'- cCGCGcGCGaGUUUgGGCCGgcGGCGCg- -3'
miRNA:   3'- -GUGU-CGC-CGAAgUCGGCuuUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 77962 0.67 0.791972
Target:  5'- cCGCGGCGGCgcgcacgaccaacaGGCCGAcGGUGCc- -3'
miRNA:   3'- -GUGUCGCCGaag-----------UCGGCUuUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 68559 0.68 0.785421
Target:  5'- cCGCGGCGGCggCGGUCGcgcaccgcguGGCGCc- -3'
miRNA:   3'- -GUGUCGCCGaaGUCGGCuu--------UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 37217 0.68 0.785421
Target:  5'- gCGCAGCGGUgcagcaAGCCGcugccGCGCUa -3'
miRNA:   3'- -GUGUCGCCGaag---UCGGCuuu--CGCGAc -5'
6736 5' -55.8 NC_001875.2 + 98372 0.68 0.784479
Target:  5'- gCGCGGCGcGCcacuUUCgaccacuGGCCGGccGCGCUGa -3'
miRNA:   3'- -GUGUCGC-CG----AAG-------UCGGCUuuCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 88515 0.68 0.766324
Target:  5'- gCGCGGCGGCaacCAcGCCGAcccGCGCg- -3'
miRNA:   3'- -GUGUCGCCGaa-GU-CGGCUuu-CGCGac -5'
6736 5' -55.8 NC_001875.2 + 10969 0.68 0.766324
Target:  5'- aCGCaAGCGGCcugCAGUcaagCGAcgAAGCGCUGc -3'
miRNA:   3'- -GUG-UCGCCGaa-GUCG----GCU--UUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 84384 0.68 0.756584
Target:  5'- cCGgGGCGGCgucggUAGCCGGAgcuucggcggcGGCGCg- -3'
miRNA:   3'- -GUgUCGCCGaa---GUCGGCUU-----------UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 69236 0.68 0.746727
Target:  5'- aCACGGCGGCgUCGaaCGGc-GCGCUGg -3'
miRNA:   3'- -GUGUCGCCGaAGUcgGCUuuCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 108735 0.68 0.746727
Target:  5'- gCGCAGCGGcCUUUGGCgGGGcagcugcacgcGGCGCg- -3'
miRNA:   3'- -GUGUCGCC-GAAGUCGgCUU-----------UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 111149 0.68 0.746727
Target:  5'- gGCGGCGGCUUgGuGUCac-GGCGCUGc -3'
miRNA:   3'- gUGUCGCCGAAgU-CGGcuuUCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.