miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 5' -55.8 NC_001875.2 + 42762 0.7 0.643991
Target:  5'- aGCGGCGcGCUcgggUCGGCCGu--GCGCa- -3'
miRNA:   3'- gUGUCGC-CGA----AGUCGGCuuuCGCGac -5'
6736 5' -55.8 NC_001875.2 + 43600 0.67 0.821805
Target:  5'- gGCAGCGGCggcgCGcGCCGcuuGCGCc- -3'
miRNA:   3'- gUGUCGCCGaa--GU-CGGCuuuCGCGac -5'
6736 5' -55.8 NC_001875.2 + 46513 0.66 0.863166
Target:  5'- uCGCGGCgGGCg--GGgCGAGAGCGCc- -3'
miRNA:   3'- -GUGUCG-CCGaagUCgGCUUUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 49582 0.66 0.87081
Target:  5'- aGCAGCuGCgc--GCCGAcGAGCGCUa -3'
miRNA:   3'- gUGUCGcCGaaguCGGCU-UUCGCGAc -5'
6736 5' -55.8 NC_001875.2 + 49637 0.69 0.706348
Target:  5'- -cCAGCGGCgacacgagCGGCCGccGGCGCc- -3'
miRNA:   3'- guGUCGCCGaa------GUCGGCuuUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 50029 0.66 0.87823
Target:  5'- uCGCcgGGCGGCgaggCGGCCGGcccGuCGCUGu -3'
miRNA:   3'- -GUG--UCGCCGaa--GUCGGCUuu-C-GCGAC- -5'
6736 5' -55.8 NC_001875.2 + 54573 0.7 0.643991
Target:  5'- cCGCGGCGGCcgcUUCGcCCGgcGGCGCg- -3'
miRNA:   3'- -GUGUCGCCG---AAGUcGGCuuUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 60212 0.67 0.821805
Target:  5'- -cCGGCGGCagauugaagCGGCCGAGcucGCGCUu -3'
miRNA:   3'- guGUCGCCGaa-------GUCGGCUUu--CGCGAc -5'
6736 5' -55.8 NC_001875.2 + 63451 0.73 0.461197
Target:  5'- -uCGGCGGC--CAGCCGcGAGGCGUUGg -3'
miRNA:   3'- guGUCGCCGaaGUCGGC-UUUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 65780 0.67 0.80394
Target:  5'- gGCGGCGGCgcgUC-GUCGuuGAGCGCc- -3'
miRNA:   3'- gUGUCGCCGa--AGuCGGCu-UUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 65873 0.66 0.87823
Target:  5'- uCGCAaCGGCUugUCGGCCGAcagguauuGGUGCa- -3'
miRNA:   3'- -GUGUcGCCGA--AGUCGGCUu-------UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 68189 0.67 0.821805
Target:  5'- aCACGGUGGacgguCUUCGGCUGAAAcccGCGUa- -3'
miRNA:   3'- -GUGUCGCC-----GAAGUCGGCUUU---CGCGac -5'
6736 5' -55.8 NC_001875.2 + 68559 0.68 0.785421
Target:  5'- cCGCGGCGGCggCGGUCGcgcaccgcguGGCGCc- -3'
miRNA:   3'- -GUGUCGCCGaaGUCGGCuu--------UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 69236 0.68 0.746727
Target:  5'- aCACGGCGGCgUCGaaCGGc-GCGCUGg -3'
miRNA:   3'- -GUGUCGCCGaAGUcgGCUuuCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 71134 0.75 0.397449
Target:  5'- gCugGGCGGCcUCAGCgCGGccGCGUUGg -3'
miRNA:   3'- -GugUCGCCGaAGUCG-GCUuuCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 71442 0.66 0.855303
Target:  5'- gGCGGCGGCaacacguucucUUCGGCCaucguGCGCg- -3'
miRNA:   3'- gUGUCGCCG-----------AAGUCGGcuuu-CGCGac -5'
6736 5' -55.8 NC_001875.2 + 72882 0.69 0.706348
Target:  5'- gGCGGCcaacGGCcUCAGUCGAacAAGCuGCUGa -3'
miRNA:   3'- gUGUCG----CCGaAGUCGGCU--UUCG-CGAC- -5'
6736 5' -55.8 NC_001875.2 + 73426 0.68 0.746727
Target:  5'- uGCAGC-GCUUCAauugcGCCGAucaaaaauGCGCUGu -3'
miRNA:   3'- gUGUCGcCGAAGU-----CGGCUuu------CGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 73621 0.71 0.581258
Target:  5'- gGCGGCGGCUgcggCGGCUGc-GGCgGCUGc -3'
miRNA:   3'- gUGUCGCCGAa---GUCGGCuuUCG-CGAC- -5'
6736 5' -55.8 NC_001875.2 + 73651 0.71 0.602097
Target:  5'- uGCGGCGGCUgcggCGGCUGc-GGCuGCUGc -3'
miRNA:   3'- gUGUCGCCGAa---GUCGGCuuUCG-CGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.