miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 5' -55.8 NC_001875.2 + 3066 0.66 0.855303
Target:  5'- gCGCAGCGGCgc--GCCGggGuCGCc- -3'
miRNA:   3'- -GUGUCGCCGaaguCGGCuuUcGCGac -5'
6736 5' -55.8 NC_001875.2 + 7114 0.7 0.675337
Target:  5'- gACGGCGGCgaaaCGGCCGAc-GCGUg- -3'
miRNA:   3'- gUGUCGCCGaa--GUCGGCUuuCGCGac -5'
6736 5' -55.8 NC_001875.2 + 7459 0.71 0.570892
Target:  5'- uGCGGCGGUguaCGGCCGAuucuGCGCc- -3'
miRNA:   3'- gUGUCGCCGaa-GUCGGCUuu--CGCGac -5'
6736 5' -55.8 NC_001875.2 + 10461 0.68 0.746727
Target:  5'- gCGCGGCGGCgcgcUCAG-UGAAuGGCGCUu -3'
miRNA:   3'- -GUGUCGCCGa---AGUCgGCUU-UCGCGAc -5'
6736 5' -55.8 NC_001875.2 + 10868 0.7 0.675337
Target:  5'- aCGCGGUGGCcgC-GUCGguGGCGCUGc -3'
miRNA:   3'- -GUGUCGCCGaaGuCGGCuuUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 10969 0.68 0.766324
Target:  5'- aCGCaAGCGGCcugCAGUcaagCGAcgAAGCGCUGc -3'
miRNA:   3'- -GUG-UCGCCGaa-GUCG----GCU--UUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 12159 0.67 0.830471
Target:  5'- -cCAGCGcUUUCGGCUGAAGcCGCUGu -3'
miRNA:   3'- guGUCGCcGAAGUCGGCUUUcGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 13905 0.66 0.847228
Target:  5'- aCGCGGCGGCgcgCAcGCCGGccuGCaGCUu -3'
miRNA:   3'- -GUGUCGCCGaa-GU-CGGCUuu-CG-CGAc -5'
6736 5' -55.8 NC_001875.2 + 16897 0.72 0.550303
Target:  5'- gCGCAGCGGCgccgcgaugUC-GCUGAuuGUGCUGa -3'
miRNA:   3'- -GUGUCGCCGa--------AGuCGGCUuuCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 18673 0.67 0.830471
Target:  5'- aCGguGCGGCUgcuGGgCGAAacguacaaggcGGCGCUGg -3'
miRNA:   3'- -GUguCGCCGAag-UCgGCUU-----------UCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 23173 0.73 0.461197
Target:  5'- gCACGGCGGCUgcgggcaCGGCCGuuGGCgGUUGc -3'
miRNA:   3'- -GUGUCGCCGAa------GUCGGCuuUCG-CGAC- -5'
6736 5' -55.8 NC_001875.2 + 29932 0.67 0.821805
Target:  5'- gACaAGgGGCcgcccaggCAGCCGAAggcgacGGCGCUGu -3'
miRNA:   3'- gUG-UCgCCGaa------GUCGGCUU------UCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 31237 0.7 0.654461
Target:  5'- aACAGCGGCcgCGGCCG---GCGCc- -3'
miRNA:   3'- gUGUCGCCGaaGUCGGCuuuCGCGac -5'
6736 5' -55.8 NC_001875.2 + 35365 0.75 0.371915
Target:  5'- aCACGGgcaGGUggagCAGCUGGAGGCGCUGc -3'
miRNA:   3'- -GUGUCg--CCGaa--GUCGGCUUUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 37217 0.68 0.785421
Target:  5'- gCGCAGCGGUgcagcaAGCCGcugccGCGCUa -3'
miRNA:   3'- -GUGUCGCCGaag---UCGGCuuu--CGCGAc -5'
6736 5' -55.8 NC_001875.2 + 39275 0.7 0.62303
Target:  5'- gCGgGGCGGCUUCugcccGCCGAcaccAAGUGCg- -3'
miRNA:   3'- -GUgUCGCCGAAGu----CGGCU----UUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 39653 0.67 0.794757
Target:  5'- cCGCGcGCGaGUUUgGGCCGgcGGCGCg- -3'
miRNA:   3'- -GUGU-CGC-CGAAgUCGGCuuUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 42331 0.74 0.451755
Target:  5'- -cCAGCGGCccCAGgCGGAAGCGCa- -3'
miRNA:   3'- guGUCGCCGaaGUCgGCUUUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 42356 0.69 0.706348
Target:  5'- --aAGCGGUUgCGGCgCGAGGGCGCc- -3'
miRNA:   3'- gugUCGCCGAaGUCG-GCUUUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 42585 0.66 0.847228
Target:  5'- gCGCAcGCGcGCgUCAGCUc--GGCGCUGg -3'
miRNA:   3'- -GUGU-CGC-CGaAGUCGGcuuUCGCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.