miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 5' -55.8 NC_001875.2 + 119679 1.09 0.002254
Target:  5'- gCACAGCGGCUUCAGCCGAAAGCGCUGg -3'
miRNA:   3'- -GUGUCGCCGAAGUCGGCUUUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 111793 0.77 0.302239
Target:  5'- gACGGCGGUgcacgCGGCCGAcGGCGcCUGg -3'
miRNA:   3'- gUGUCGCCGaa---GUCGGCUuUCGC-GAC- -5'
6736 5' -55.8 NC_001875.2 + 35365 0.75 0.371915
Target:  5'- aCACGGgcaGGUggagCAGCUGGAGGCGCUGc -3'
miRNA:   3'- -GUGUCg--CCGaa--GUCGGCUUUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 71134 0.75 0.397449
Target:  5'- gCugGGCGGCcUCAGCgCGGccGCGUUGg -3'
miRNA:   3'- -GugUCGCCGaAGUCG-GCUuuCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 73705 0.74 0.433195
Target:  5'- uGCGGCGGCUgCGGCUGuuGGgGUUGg -3'
miRNA:   3'- gUGUCGCCGAaGUCGGCuuUCgCGAC- -5'
6736 5' -55.8 NC_001875.2 + 42331 0.74 0.451755
Target:  5'- -cCAGCGGCccCAGgCGGAAGCGCa- -3'
miRNA:   3'- guGUCGCCGaaGUCgGCUUUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 23173 0.73 0.461197
Target:  5'- gCACGGCGGCUgcgggcaCGGCCGuuGGCgGUUGc -3'
miRNA:   3'- -GUGUCGCCGAa------GUCGGCuuUCG-CGAC- -5'
6736 5' -55.8 NC_001875.2 + 63451 0.73 0.461197
Target:  5'- -uCGGCGGC--CAGCCGcGAGGCGUUGg -3'
miRNA:   3'- guGUCGCCGaaGUCGGC-UUUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 124790 0.73 0.470742
Target:  5'- cCGCAGCGGaaccaGGCCGAcAAGCGCg- -3'
miRNA:   3'- -GUGUCGCCgaag-UCGGCU-UUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 131523 0.72 0.540092
Target:  5'- uGCAGCGGCUggaagCGGCgcAAAGCGCg- -3'
miRNA:   3'- gUGUCGCCGAa----GUCGgcUUUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 16897 0.72 0.550303
Target:  5'- gCGCAGCGGCgccgcgaugUC-GCUGAuuGUGCUGa -3'
miRNA:   3'- -GUGUCGCCGa--------AGuCGGCUuuCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 7459 0.71 0.570892
Target:  5'- uGCGGCGGUguaCGGCCGAuucuGCGCc- -3'
miRNA:   3'- gUGUCGCCGaa-GUCGGCUuu--CGCGac -5'
6736 5' -55.8 NC_001875.2 + 73621 0.71 0.581258
Target:  5'- gGCGGCGGCUgcggCGGCUGc-GGCgGCUGc -3'
miRNA:   3'- gUGUCGCCGAa---GUCGGCuuUCG-CGAC- -5'
6736 5' -55.8 NC_001875.2 + 73651 0.71 0.602097
Target:  5'- uGCGGCGGCUgcggCGGCUGc-GGCuGCUGc -3'
miRNA:   3'- gUGUCGCCGAa---GUCGGCuuUCG-CGAC- -5'
6736 5' -55.8 NC_001875.2 + 39275 0.7 0.62303
Target:  5'- gCGgGGCGGCUUCugcccGCCGAcaccAAGUGCg- -3'
miRNA:   3'- -GUgUCGCCGAAGu----CGGCU----UUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 99690 0.7 0.643991
Target:  5'- aGCAGCGcGuCUUCGccGCCGuuGAGCGCUa -3'
miRNA:   3'- gUGUCGC-C-GAAGU--CGGCu-UUCGCGAc -5'
6736 5' -55.8 NC_001875.2 + 54573 0.7 0.643991
Target:  5'- cCGCGGCGGCcgcUUCGcCCGgcGGCGCg- -3'
miRNA:   3'- -GUGUCGCCG---AAGUcGGCuuUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 42762 0.7 0.643991
Target:  5'- aGCGGCGcGCUcgggUCGGCCGu--GCGCa- -3'
miRNA:   3'- gUGUCGC-CGA----AGUCGGCuuuCGCGac -5'
6736 5' -55.8 NC_001875.2 + 31237 0.7 0.654461
Target:  5'- aACAGCGGCcgCGGCCG---GCGCc- -3'
miRNA:   3'- gUGUCGCCGaaGUCGGCuuuCGCGac -5'
6736 5' -55.8 NC_001875.2 + 126801 0.7 0.66178
Target:  5'- uGCGGCGGCUUUgcagccaauaauggAGaCCGAGgcGGCGCa- -3'
miRNA:   3'- gUGUCGCCGAAG--------------UC-GGCUU--UCGCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.