miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 5' -55.8 NC_001875.2 + 37217 0.68 0.785421
Target:  5'- gCGCAGCGGUgcagcaAGCCGcugccGCGCUa -3'
miRNA:   3'- -GUGUCGCCGaag---UCGGCuuu--CGCGAc -5'
6736 5' -55.8 NC_001875.2 + 103260 0.7 0.675337
Target:  5'- gGCGGUGGCUUCGgaguucacGCUGAcuAGCGCa- -3'
miRNA:   3'- gUGUCGCCGAAGU--------CGGCUu-UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 131432 0.69 0.685724
Target:  5'- gCGCAGCuGGaca-GGUCGGAAGCGUUGa -3'
miRNA:   3'- -GUGUCG-CCgaagUCGGCUUUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 49637 0.69 0.706348
Target:  5'- -cCAGCGGCgacacgagCGGCCGccGGCGCc- -3'
miRNA:   3'- guGUCGCCGaa------GUCGGCuuUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 93399 0.69 0.725698
Target:  5'- aCGCgGGCGcGUUaaUCAGCCGuuuagaaGAGGCGCUGc -3'
miRNA:   3'- -GUG-UCGC-CGA--AGUCGGC-------UUUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 10461 0.68 0.746727
Target:  5'- gCGCGGCGGCgcgcUCAG-UGAAuGGCGCUu -3'
miRNA:   3'- -GUGUCGCCGa---AGUCgGCUU-UCGCGAc -5'
6736 5' -55.8 NC_001875.2 + 99396 0.68 0.746727
Target:  5'- -cCGGCGGCgcCAGCgGGucGCGCa- -3'
miRNA:   3'- guGUCGCCGaaGUCGgCUuuCGCGac -5'
6736 5' -55.8 NC_001875.2 + 84384 0.68 0.756584
Target:  5'- cCGgGGCGGCgucggUAGCCGGAgcuucggcggcGGCGCg- -3'
miRNA:   3'- -GUgUCGCCGaa---GUCGGCUU-----------UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 10969 0.68 0.766324
Target:  5'- aCGCaAGCGGCcugCAGUcaagCGAcgAAGCGCUGc -3'
miRNA:   3'- -GUG-UCGCCGaa-GUCG----GCU--UUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 10868 0.7 0.675337
Target:  5'- aCGCGGUGGCcgC-GUCGguGGCGCUGc -3'
miRNA:   3'- -GUGUCGCCGaaGuCGGCuuUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 126801 0.7 0.66178
Target:  5'- uGCGGCGGCUUUgcagccaauaauggAGaCCGAGgcGGCGCa- -3'
miRNA:   3'- gUGUCGCCGAAG--------------UC-GGCUU--UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 54573 0.7 0.643991
Target:  5'- cCGCGGCGGCcgcUUCGcCCGgcGGCGCg- -3'
miRNA:   3'- -GUGUCGCCG---AAGUcGGCuuUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 35365 0.75 0.371915
Target:  5'- aCACGGgcaGGUggagCAGCUGGAGGCGCUGc -3'
miRNA:   3'- -GUGUCg--CCGaa--GUCGGCUUUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 71134 0.75 0.397449
Target:  5'- gCugGGCGGCcUCAGCgCGGccGCGUUGg -3'
miRNA:   3'- -GugUCGCCGaAGUCG-GCUuuCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 42331 0.74 0.451755
Target:  5'- -cCAGCGGCccCAGgCGGAAGCGCa- -3'
miRNA:   3'- guGUCGCCGaaGUCgGCUUUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 63451 0.73 0.461197
Target:  5'- -uCGGCGGC--CAGCCGcGAGGCGUUGg -3'
miRNA:   3'- guGUCGCCGaaGUCGGC-UUUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 131523 0.72 0.540092
Target:  5'- uGCAGCGGCUggaagCGGCgcAAAGCGCg- -3'
miRNA:   3'- gUGUCGCCGAa----GUCGgcUUUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 7459 0.71 0.570892
Target:  5'- uGCGGCGGUguaCGGCCGAuucuGCGCc- -3'
miRNA:   3'- gUGUCGCCGaa-GUCGGCUuu--CGCGac -5'
6736 5' -55.8 NC_001875.2 + 39275 0.7 0.62303
Target:  5'- gCGgGGCGGCUUCugcccGCCGAcaccAAGUGCg- -3'
miRNA:   3'- -GUgUCGCCGAAGu----CGGCU----UUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 42762 0.7 0.643991
Target:  5'- aGCGGCGcGCUcgggUCGGCCGu--GCGCa- -3'
miRNA:   3'- gUGUCGC-CGA----AGUCGGCuuuCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.