miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 5' -55.8 NC_001875.2 + 119679 1.09 0.002254
Target:  5'- gCACAGCGGCUUCAGCCGAAAGCGCUGg -3'
miRNA:   3'- -GUGUCGCCGAAGUCGGCUUUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 69236 0.68 0.746727
Target:  5'- aCACGGCGGCgUCGaaCGGc-GCGCUGg -3'
miRNA:   3'- -GUGUCGCCGaAGUcgGCUuuCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 108735 0.68 0.746727
Target:  5'- gCGCAGCGGcCUUUGGCgGGGcagcugcacgcGGCGCg- -3'
miRNA:   3'- -GUGUCGCC-GAAGUCGgCUU-----------UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 121215 0.66 0.881134
Target:  5'- gCugGGCGGCacCGGCCGGuuguugucguacacaGGGUGCa- -3'
miRNA:   3'- -GugUCGCCGaaGUCGGCU---------------UUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 16897 0.72 0.550303
Target:  5'- gCGCAGCGGCgccgcgaugUC-GCUGAuuGUGCUGa -3'
miRNA:   3'- -GUGUCGCCGa--------AGuCGGCUuuCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 73621 0.71 0.581258
Target:  5'- gGCGGCGGCUgcggCGGCUGc-GGCgGCUGc -3'
miRNA:   3'- gUGUCGCCGAa---GUCGGCuuUCG-CGAC- -5'
6736 5' -55.8 NC_001875.2 + 99690 0.7 0.643991
Target:  5'- aGCAGCGcGuCUUCGccGCCGuuGAGCGCUa -3'
miRNA:   3'- gUGUCGC-C-GAAGU--CGGCu-UUCGCGAc -5'
6736 5' -55.8 NC_001875.2 + 31237 0.7 0.654461
Target:  5'- aACAGCGGCcgCGGCCG---GCGCc- -3'
miRNA:   3'- gUGUCGCCGaaGUCGGCuuuCGCGac -5'
6736 5' -55.8 NC_001875.2 + 42356 0.69 0.706348
Target:  5'- --aAGCGGUUgCGGCgCGAGGGCGCc- -3'
miRNA:   3'- gugUCGCCGAaGUCG-GCUUUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 73426 0.68 0.746727
Target:  5'- uGCAGC-GCUUCAauugcGCCGAucaaaaauGCGCUGu -3'
miRNA:   3'- gUGUCGcCGAAGU-----CGGCUuu------CGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 73791 0.69 0.726709
Target:  5'- --uGGCGGCggCGGCUGGAacggcAGCGCg- -3'
miRNA:   3'- gugUCGCCGaaGUCGGCUU-----UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 104690 0.69 0.685724
Target:  5'- aCGCAGCGGCgaccaAGCUGGAcgagcuaaacAGgGCUGu -3'
miRNA:   3'- -GUGUCGCCGaag--UCGGCUU----------UCgCGAC- -5'
6736 5' -55.8 NC_001875.2 + 73705 0.74 0.433195
Target:  5'- uGCGGCGGCUgCGGCUGuuGGgGUUGg -3'
miRNA:   3'- gUGUCGCCGAaGUCGGCuuUCgCGAC- -5'
6736 5' -55.8 NC_001875.2 + 94401 0.69 0.726709
Target:  5'- uGCGGCGGCUauuuggCcGCCGAcuGCGCc- -3'
miRNA:   3'- gUGUCGCCGAa-----GuCGGCUuuCGCGac -5'
6736 5' -55.8 NC_001875.2 + 23173 0.73 0.461197
Target:  5'- gCACGGCGGCUgcgggcaCGGCCGuuGGCgGUUGc -3'
miRNA:   3'- -GUGUCGCCGAa------GUCGGCuuUCG-CGAC- -5'
6736 5' -55.8 NC_001875.2 + 7114 0.7 0.675337
Target:  5'- gACGGCGGCgaaaCGGCCGAc-GCGUg- -3'
miRNA:   3'- gUGUCGCCGaa--GUCGGCUuuCGCGac -5'
6736 5' -55.8 NC_001875.2 + 113536 0.69 0.726709
Target:  5'- aGCGGCGGCgg-GGCCaauAAGCGCg- -3'
miRNA:   3'- gUGUCGCCGaagUCGGcu-UUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 102901 0.68 0.746727
Target:  5'- aUugAGCGGC--CGGCCGuuGAAGCGgaGg -3'
miRNA:   3'- -GugUCGCCGaaGUCGGC--UUUCGCgaC- -5'
6736 5' -55.8 NC_001875.2 + 124790 0.73 0.470742
Target:  5'- cCGCAGCGGaaccaGGCCGAcAAGCGCg- -3'
miRNA:   3'- -GUGUCGCCgaag-UCGGCU-UUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 73651 0.71 0.602097
Target:  5'- uGCGGCGGCUgcggCGGCUGc-GGCuGCUGc -3'
miRNA:   3'- gUGUCGCCGAa---GUCGGCuuUCG-CGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.