miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 3' -52.5 NC_001875.2 + 75504 0.67 0.957448
Target:  5'- -gGCGAuGGCGU-CGGCGAugGCGUCGg -3'
miRNA:   3'- cgCGCU-UCGCAuGCUGCUcaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 75282 0.67 0.957448
Target:  5'- -gGCGAuGGCGU-CGGCGAugGCGUCGg -3'
miRNA:   3'- cgCGCU-UCGCAuGCUGCUcaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 42187 0.67 0.953487
Target:  5'- cGCGCGGuugGGCGUuucaaauagcgcGCGGCGgcacgcguGGUGCuuGUCAa -3'
miRNA:   3'- -CGCGCU---UCGCA------------UGCUGC--------UCACG--UAGU- -5'
6737 3' -52.5 NC_001875.2 + 90728 0.67 0.953487
Target:  5'- aGCGCGAcacGaCGUGCGACG-GUGUg--- -3'
miRNA:   3'- -CGCGCUu--C-GCAUGCUGCuCACGuagu -5'
6737 3' -52.5 NC_001875.2 + 96987 0.67 0.949285
Target:  5'- cGUGCGcaaguuGCGuUGCGACGGGUGUg--- -3'
miRNA:   3'- -CGCGCuu----CGC-AUGCUGCUCACGuagu -5'
6737 3' -52.5 NC_001875.2 + 39656 0.68 0.944838
Target:  5'- cGCGCGAguuugggccggcGGCGcgcgGCGGCGAGcUGCu--- -3'
miRNA:   3'- -CGCGCU------------UCGCa---UGCUGCUC-ACGuagu -5'
6737 3' -52.5 NC_001875.2 + 56718 0.68 0.944838
Target:  5'- cGCGCGAAaCGUACG-CG-GUGCcgugggacuGUCAg -3'
miRNA:   3'- -CGCGCUUcGCAUGCuGCuCACG---------UAGU- -5'
6737 3' -52.5 NC_001875.2 + 65788 0.68 0.940143
Target:  5'- cGCGCGcGGCGU-CGGCGcgcGGUGCcugCGc -3'
miRNA:   3'- -CGCGCuUCGCAuGCUGC---UCACGua-GU- -5'
6737 3' -52.5 NC_001875.2 + 89446 0.68 0.940143
Target:  5'- uGCGCGAgcaagugcucugAGCGagacuguCGACGuGUGCAUgGa -3'
miRNA:   3'- -CGCGCU------------UCGCau-----GCUGCuCACGUAgU- -5'
6737 3' -52.5 NC_001875.2 + 66110 0.68 0.935198
Target:  5'- cCGCGcGGCGgGCGGCGAGgcgGCGc-- -3'
miRNA:   3'- cGCGCuUCGCaUGCUGCUCa--CGUagu -5'
6737 3' -52.5 NC_001875.2 + 21492 0.68 0.930001
Target:  5'- gGCGUcGGGCG-ACGcCGAGUGCAg-- -3'
miRNA:   3'- -CGCGcUUCGCaUGCuGCUCACGUagu -5'
6737 3' -52.5 NC_001875.2 + 41851 0.68 0.930001
Target:  5'- cCGCGccGCG-GCGGCGAGcUGCAaCAa -3'
miRNA:   3'- cGCGCuuCGCaUGCUGCUC-ACGUaGU- -5'
6737 3' -52.5 NC_001875.2 + 3148 0.68 0.929467
Target:  5'- uGCGCGGacgcGGCGUcggGCGGCGAGUaggugagccggcgGCcgCGc -3'
miRNA:   3'- -CGCGCU----UCGCA---UGCUGCUCA-------------CGuaGU- -5'
6737 3' -52.5 NC_001875.2 + 58320 0.68 0.918849
Target:  5'- gGCGCGAuugaacCGUuCGACucGUGCGUCAc -3'
miRNA:   3'- -CGCGCUuc----GCAuGCUGcuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 51775 0.69 0.912896
Target:  5'- cCGCcaaAGGCGUugGGCGAG-GCGUUu -3'
miRNA:   3'- cGCGc--UUCGCAugCUGCUCaCGUAGu -5'
6737 3' -52.5 NC_001875.2 + 102998 0.69 0.912896
Target:  5'- aCGUGGuGGCGUGCGGCaAGUGCGc-- -3'
miRNA:   3'- cGCGCU-UCGCAUGCUGcUCACGUagu -5'
6737 3' -52.5 NC_001875.2 + 16245 0.69 0.912896
Target:  5'- gGCGaCGAGGcCGUcACG-CGcGUGCGUCAc -3'
miRNA:   3'- -CGC-GCUUC-GCA-UGCuGCuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 127839 0.69 0.906057
Target:  5'- cGgGCGcGGCGUuggACGACGAGaaggaccUGCAUUg -3'
miRNA:   3'- -CgCGCuUCGCA---UGCUGCUC-------ACGUAGu -5'
6737 3' -52.5 NC_001875.2 + 1364 0.69 0.904782
Target:  5'- gGUGCGAAcgcucucgaacggcGCGUGCuaGCG-GUGCGUCAg -3'
miRNA:   3'- -CGCGCUU--------------CGCAUGc-UGCuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 118874 0.69 0.90414
Target:  5'- gGCGCGGAGCccacgcgccgccGCGACGAGacCGUCAc -3'
miRNA:   3'- -CGCGCUUCGca----------UGCUGCUCacGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.