miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 3' -52.5 NC_001875.2 + 42910 0.67 0.957448
Target:  5'- uGUGCGccgcaugccguGGGCGUcgcagucaaACGugGcGUGCGUCAg -3'
miRNA:   3'- -CGCGC-----------UUCGCA---------UGCugCuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 47552 0.67 0.961172
Target:  5'- uCGCGAcGCGUaucAUGACGAGcGCAa-- -3'
miRNA:   3'- cGCGCUuCGCA---UGCUGCUCaCGUagu -5'
6737 3' -52.5 NC_001875.2 + 47969 0.71 0.823018
Target:  5'- aGCGaCGAGGaacCGUGCGAgCGGG-GCGUCGa -3'
miRNA:   3'- -CGC-GCUUC---GCAUGCU-GCUCaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 51775 0.69 0.912896
Target:  5'- cCGCcaaAGGCGUugGGCGAG-GCGUUu -3'
miRNA:   3'- cGCGc--UUCGCAugCUGCUCaCGUAGu -5'
6737 3' -52.5 NC_001875.2 + 54358 0.7 0.872015
Target:  5'- cGCGCccGgcGCGUugGGCGAGcGCAc-- -3'
miRNA:   3'- -CGCG--CuuCGCAugCUGCUCaCGUagu -5'
6737 3' -52.5 NC_001875.2 + 56718 0.68 0.944838
Target:  5'- cGCGCGAAaCGUACG-CG-GUGCcgugggacuGUCAg -3'
miRNA:   3'- -CGCGCUUcGCAUGCuGCuCACG---------UAGU- -5'
6737 3' -52.5 NC_001875.2 + 58320 0.68 0.918849
Target:  5'- gGCGCGAuugaacCGUuCGACucGUGCGUCAc -3'
miRNA:   3'- -CGCGCUuc----GCAuGCUGcuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 58768 0.7 0.879425
Target:  5'- cGCGCGuGGCcaACGACGAcGUGCGc-- -3'
miRNA:   3'- -CGCGCuUCGcaUGCUGCU-CACGUagu -5'
6737 3' -52.5 NC_001875.2 + 59251 0.73 0.727744
Target:  5'- aGCGCGAAGCGUACGAgCGcaauuUGCGg-- -3'
miRNA:   3'- -CGCGCUUCGCAUGCU-GCuc---ACGUagu -5'
6737 3' -52.5 NC_001875.2 + 64911 0.72 0.77709
Target:  5'- cGCGCGcaGAGCG-ACGACGAcauuGUGCGcCAu -3'
miRNA:   3'- -CGCGC--UUCGCaUGCUGCU----CACGUaGU- -5'
6737 3' -52.5 NC_001875.2 + 65719 0.66 0.97068
Target:  5'- uGUGCGAcGCG-ACGACGgccagcuguacacGG-GCAUCAc -3'
miRNA:   3'- -CGCGCUuCGCaUGCUGC-------------UCaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 65769 0.69 0.886602
Target:  5'- cGUGCGcGGCGgGCGGCG-GcGCGUCGu -3'
miRNA:   3'- -CGCGCuUCGCaUGCUGCuCaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 65788 0.68 0.940143
Target:  5'- cGCGCGcGGCGU-CGGCGcgcGGUGCcugCGc -3'
miRNA:   3'- -CGCGCuUCGCAuGCUGC---UCACGua-GU- -5'
6737 3' -52.5 NC_001875.2 + 66110 0.68 0.935198
Target:  5'- cCGCGcGGCGgGCGGCGAGgcgGCGc-- -3'
miRNA:   3'- cGCGCuUCGCaUGCUGCUCa--CGUagu -5'
6737 3' -52.5 NC_001875.2 + 66947 0.7 0.878694
Target:  5'- gGCGCGAcagcugAGCGU-CGACGAccuuaacGUGCucAUCAa -3'
miRNA:   3'- -CGCGCU------UCGCAuGCUGCU-------CACG--UAGU- -5'
6737 3' -52.5 NC_001875.2 + 68894 0.66 0.973808
Target:  5'- aCGCc--GCGUcCGGCGAGUGUcgaGUCAa -3'
miRNA:   3'- cGCGcuuCGCAuGCUGCUCACG---UAGU- -5'
6737 3' -52.5 NC_001875.2 + 72567 0.71 0.831689
Target:  5'- gGCGCGGGcGCGgGCGcuGCGGGUGCGg-- -3'
miRNA:   3'- -CGCGCUU-CGCaUGC--UGCUCACGUagu -5'
6737 3' -52.5 NC_001875.2 + 74601 0.66 0.973808
Target:  5'- aCGCaGAuGUGgcCGugGAGUGCcUCAa -3'
miRNA:   3'- cGCG-CUuCGCauGCugCUCACGuAGU- -5'
6737 3' -52.5 NC_001875.2 + 75282 0.67 0.957448
Target:  5'- -gGCGAuGGCGU-CGGCGAugGCGUCGg -3'
miRNA:   3'- cgCGCU-UCGCAuGCUGCUcaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 75504 0.67 0.957448
Target:  5'- -gGCGAuGGCGU-CGGCGAugGCGUCGg -3'
miRNA:   3'- cgCGCU-UCGCAuGCUGCUcaCGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.