miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 3' -52.5 NC_001875.2 + 1364 0.69 0.904782
Target:  5'- gGUGCGAAcgcucucgaacggcGCGUGCuaGCG-GUGCGUCAg -3'
miRNA:   3'- -CGCGCUU--------------CGCAUGc-UGCuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 3148 0.68 0.929467
Target:  5'- uGCGCGGacgcGGCGUcggGCGGCGAGUaggugagccggcgGCcgCGc -3'
miRNA:   3'- -CGCGCU----UCGCA---UGCUGCUCA-------------CGuaGU- -5'
6737 3' -52.5 NC_001875.2 + 3325 0.66 0.976434
Target:  5'- gGCGCGAuaAGCGg--GACGGGcGCcUCGu -3'
miRNA:   3'- -CGCGCU--UCGCaugCUGCUCaCGuAGU- -5'
6737 3' -52.5 NC_001875.2 + 4612 0.7 0.864378
Target:  5'- cGCGCucaaacacGGUGUACGGCGAaaGCGUCAg -3'
miRNA:   3'- -CGCGcu------UCGCAUGCUGCUcaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 10157 0.67 0.961172
Target:  5'- aGCGCGGcguGGUGgcCGACGAGaccacCGUCAc -3'
miRNA:   3'- -CGCGCU---UCGCauGCUGCUCac---GUAGU- -5'
6737 3' -52.5 NC_001875.2 + 11138 0.66 0.96793
Target:  5'- uCGCGAAGUGauugcCGACGGGgagGCGUa- -3'
miRNA:   3'- cGCGCUUCGCau---GCUGCUCa--CGUAgu -5'
6737 3' -52.5 NC_001875.2 + 12673 0.73 0.707325
Target:  5'- cGCGCGccGCGUugGcCGGGUGUggCGg -3'
miRNA:   3'- -CGCGCuuCGCAugCuGCUCACGuaGU- -5'
6737 3' -52.5 NC_001875.2 + 14937 0.67 0.964664
Target:  5'- gGUGCGGauGGCGUugG-CGucGUGCAccUCAu -3'
miRNA:   3'- -CGCGCU--UCGCAugCuGCu-CACGU--AGU- -5'
6737 3' -52.5 NC_001875.2 + 16245 0.69 0.912896
Target:  5'- gGCGaCGAGGcCGUcACG-CGcGUGCGUCAc -3'
miRNA:   3'- -CGC-GCUUC-GCA-UGCuGCuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 19355 0.66 0.976434
Target:  5'- uGCGCGGAGCGUugGcCGAc-GUAa-- -3'
miRNA:   3'- -CGCGCUUCGCAugCuGCUcaCGUagu -5'
6737 3' -52.5 NC_001875.2 + 21492 0.68 0.930001
Target:  5'- gGCGUcGGGCG-ACGcCGAGUGCAg-- -3'
miRNA:   3'- -CGCGcUUCGCaUGCuGCUCACGUagu -5'
6737 3' -52.5 NC_001875.2 + 22842 0.74 0.686636
Target:  5'- cCGCGAAGCGUuugcGCGAcCGAGUugauuGCGUCc -3'
miRNA:   3'- cGCGCUUCGCA----UGCU-GCUCA-----CGUAGu -5'
6737 3' -52.5 NC_001875.2 + 26092 0.66 0.976434
Target:  5'- aGUGUGAAGUGgGCGAgGAGcuCAUCGa -3'
miRNA:   3'- -CGCGCUUCGCaUGCUgCUCacGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 32058 0.66 0.978862
Target:  5'- uGCGCGAcGCGUACcgcaaaauGGCGcucGUGCAg-- -3'
miRNA:   3'- -CGCGCUuCGCAUG--------CUGCu--CACGUagu -5'
6737 3' -52.5 NC_001875.2 + 34609 0.66 0.978862
Target:  5'- gGCGCaaacaGGAGCGgccCGAgGAcaagguGUGCAUCAu -3'
miRNA:   3'- -CGCG-----CUUCGCau-GCUgCU------CACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 39168 0.7 0.879425
Target:  5'- cCGCGAGGCGggcCGGCGGuUGCGUg- -3'
miRNA:   3'- cGCGCUUCGCau-GCUGCUcACGUAgu -5'
6737 3' -52.5 NC_001875.2 + 39656 0.68 0.944838
Target:  5'- cGCGCGAguuugggccggcGGCGcgcgGCGGCGAGcUGCu--- -3'
miRNA:   3'- -CGCGCU------------UCGCa---UGCUGCUC-ACGuagu -5'
6737 3' -52.5 NC_001875.2 + 41851 0.68 0.930001
Target:  5'- cCGCGccGCG-GCGGCGAGcUGCAaCAa -3'
miRNA:   3'- cGCGCuuCGCaUGCUGCUC-ACGUaGU- -5'
6737 3' -52.5 NC_001875.2 + 42187 0.67 0.953487
Target:  5'- cGCGCGGuugGGCGUuucaaauagcgcGCGGCGgcacgcguGGUGCuuGUCAa -3'
miRNA:   3'- -CGCGCU---UCGCA------------UGCUGC--------UCACG--UAGU- -5'
6737 3' -52.5 NC_001875.2 + 42492 0.78 0.433175
Target:  5'- cCGaCGAAGCcaACGACGAGUGCAUUg -3'
miRNA:   3'- cGC-GCUUCGcaUGCUGCUCACGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.