miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 3' -52.5 NC_001875.2 + 10157 0.67 0.961172
Target:  5'- aGCGCGGcguGGUGgcCGACGAGaccacCGUCAc -3'
miRNA:   3'- -CGCGCU---UCGCauGCUGCUCac---GUAGU- -5'
6737 3' -52.5 NC_001875.2 + 39656 0.68 0.944838
Target:  5'- cGCGCGAguuugggccggcGGCGcgcgGCGGCGAGcUGCu--- -3'
miRNA:   3'- -CGCGCU------------UCGCa---UGCUGCUC-ACGuagu -5'
6737 3' -52.5 NC_001875.2 + 96987 0.67 0.949285
Target:  5'- cGUGCGcaaguuGCGuUGCGACGGGUGUg--- -3'
miRNA:   3'- -CGCGCuu----CGC-AUGCUGCUCACGuagu -5'
6737 3' -52.5 NC_001875.2 + 42187 0.67 0.953487
Target:  5'- cGCGCGGuugGGCGUuucaaauagcgcGCGGCGgcacgcguGGUGCuuGUCAa -3'
miRNA:   3'- -CGCGCU---UCGCA------------UGCUGC--------UCACG--UAGU- -5'
6737 3' -52.5 NC_001875.2 + 90728 0.67 0.953487
Target:  5'- aGCGCGAcacGaCGUGCGACG-GUGUg--- -3'
miRNA:   3'- -CGCGCUu--C-GCAUGCUGCuCACGuagu -5'
6737 3' -52.5 NC_001875.2 + 75282 0.67 0.957448
Target:  5'- -gGCGAuGGCGU-CGGCGAugGCGUCGg -3'
miRNA:   3'- cgCGCU-UCGCAuGCUGCUcaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 75504 0.67 0.957448
Target:  5'- -gGCGAuGGCGU-CGGCGAugGCGUCGg -3'
miRNA:   3'- cgCGCU-UCGCAuGCUGCUcaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 42910 0.67 0.957448
Target:  5'- uGUGCGccgcaugccguGGGCGUcgcagucaaACGugGcGUGCGUCAg -3'
miRNA:   3'- -CGCGC-----------UUCGCA---------UGCugCuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 114737 0.67 0.957448
Target:  5'- -gGCGguGCGUcaGCGACGAccGUGCuuuUCGg -3'
miRNA:   3'- cgCGCuuCGCA--UGCUGCU--CACGu--AGU- -5'
6737 3' -52.5 NC_001875.2 + 41851 0.68 0.930001
Target:  5'- cCGCGccGCG-GCGGCGAGcUGCAaCAa -3'
miRNA:   3'- cGCGCuuCGCaUGCUGCUC-ACGUaGU- -5'
6737 3' -52.5 NC_001875.2 + 16245 0.69 0.912896
Target:  5'- gGCGaCGAGGcCGUcACG-CGcGUGCGUCAc -3'
miRNA:   3'- -CGC-GCUUC-GCA-UGCuGCuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 98000 0.69 0.900239
Target:  5'- uGCGCGAcGUGUuguuUGACGAG-GCGUUu -3'
miRNA:   3'- -CGCGCUuCGCAu---GCUGCUCaCGUAGu -5'
6737 3' -52.5 NC_001875.2 + 120283 0.71 0.805134
Target:  5'- aGCGCGAugaagcGCGUGCGAUGcaacaaGGUGCG-CAc -3'
miRNA:   3'- -CGCGCUu-----CGCAUGCUGC------UCACGUaGU- -5'
6737 3' -52.5 NC_001875.2 + 114647 0.71 0.805134
Target:  5'- uCGCGAacGGCGUGugcuauuuuUGGCG-GUGCGUCAg -3'
miRNA:   3'- cGCGCU--UCGCAU---------GCUGCuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 47969 0.71 0.823018
Target:  5'- aGCGaCGAGGaacCGUGCGAgCGGG-GCGUCGa -3'
miRNA:   3'- -CGC-GCUUC---GCAUGCU-GCUCaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 72567 0.71 0.831689
Target:  5'- gGCGCGGGcGCGgGCGcuGCGGGUGCGg-- -3'
miRNA:   3'- -CGCGCUU-CGCaUGC--UGCUCACGUagu -5'
6737 3' -52.5 NC_001875.2 + 4612 0.7 0.864378
Target:  5'- cGCGCucaaacacGGUGUACGGCGAaaGCGUCAg -3'
miRNA:   3'- -CGCGcu------UCGCAUGCUGCUcaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 39168 0.7 0.879425
Target:  5'- cCGCGAGGCGggcCGGCGGuUGCGUg- -3'
miRNA:   3'- cGCGCUUCGCau-GCUGCUcACGUAgu -5'
6737 3' -52.5 NC_001875.2 + 65769 0.69 0.886602
Target:  5'- cGUGCGcGGCGgGCGGCG-GcGCGUCGu -3'
miRNA:   3'- -CGCGCuUCGCaUGCUGCuCaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 93427 0.69 0.893541
Target:  5'- ---aGAGGCGcugcACGGCGAGUGCuUCAu -3'
miRNA:   3'- cgcgCUUCGCa---UGCUGCUCACGuAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.