miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 3' -52.5 NC_001875.2 + 118836 1.12 0.003801
Target:  5'- cGCGCGAAGCGUACGACGAGUGCAUCAa -3'
miRNA:   3'- -CGCGCUUCGCAUGCUGCUCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 58320 0.68 0.918849
Target:  5'- gGCGCGAuugaacCGUuCGACucGUGCGUCAc -3'
miRNA:   3'- -CGCGCUuc----GCAuGCUGcuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 21492 0.68 0.930001
Target:  5'- gGCGUcGGGCG-ACGcCGAGUGCAg-- -3'
miRNA:   3'- -CGCGcUUCGCaUGCuGCUCACGUagu -5'
6737 3' -52.5 NC_001875.2 + 3325 0.66 0.976434
Target:  5'- gGCGCGAuaAGCGg--GACGGGcGCcUCGu -3'
miRNA:   3'- -CGCGCU--UCGCaugCUGCUCaCGuAGU- -5'
6737 3' -52.5 NC_001875.2 + 12673 0.73 0.707325
Target:  5'- cGCGCGccGCGUugGcCGGGUGUggCGg -3'
miRNA:   3'- -CGCGCuuCGCAugCuGCUCACGuaGU- -5'
6737 3' -52.5 NC_001875.2 + 64911 0.72 0.77709
Target:  5'- cGCGCGcaGAGCG-ACGACGAcauuGUGCGcCAu -3'
miRNA:   3'- -CGCGC--UUCGCaUGCUGCU----CACGUaGU- -5'
6737 3' -52.5 NC_001875.2 + 89960 0.7 0.847629
Target:  5'- gGCGCGGcgacaGGUGUugGACGAGcaguuguUGCAgcUCGc -3'
miRNA:   3'- -CGCGCU-----UCGCAugCUGCUC-------ACGU--AGU- -5'
6737 3' -52.5 NC_001875.2 + 54358 0.7 0.872015
Target:  5'- cGCGCccGgcGCGUugGGCGAGcGCAc-- -3'
miRNA:   3'- -CGCG--CuuCGCAugCUGCUCaCGUagu -5'
6737 3' -52.5 NC_001875.2 + 86143 0.69 0.89958
Target:  5'- uGCGCGgcGCGcGCGGCGAgaugacggacgugGUGCGg-- -3'
miRNA:   3'- -CGCGCuuCGCaUGCUGCU-------------CACGUagu -5'
6737 3' -52.5 NC_001875.2 + 102998 0.69 0.912896
Target:  5'- aCGUGGuGGCGUGCGGCaAGUGCGc-- -3'
miRNA:   3'- cGCGCU-UCGCAUGCUGcUCACGUagu -5'
6737 3' -52.5 NC_001875.2 + 1364 0.69 0.904782
Target:  5'- gGUGCGAAcgcucucgaacggcGCGUGCuaGCG-GUGCGUCAg -3'
miRNA:   3'- -CGCGCUU--------------CGCAUGc-UGCuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 58768 0.7 0.879425
Target:  5'- cGCGCGuGGCcaACGACGAcGUGCGc-- -3'
miRNA:   3'- -CGCGCuUCGcaUGCUGCU-CACGUagu -5'
6737 3' -52.5 NC_001875.2 + 42492 0.78 0.433175
Target:  5'- cCGaCGAAGCcaACGACGAGUGCAUUg -3'
miRNA:   3'- cGC-GCUUCGcaUGCUGCUCACGUAGu -5'
6737 3' -52.5 NC_001875.2 + 127839 0.69 0.906057
Target:  5'- cGgGCGcGGCGUuggACGACGAGaaggaccUGCAUUg -3'
miRNA:   3'- -CgCGCuUCGCA---UGCUGCUC-------ACGUAGu -5'
6737 3' -52.5 NC_001875.2 + 105158 0.76 0.540475
Target:  5'- cGCGCGGcgcGUGUugGGCGAagucaucauGUGCAUCAc -3'
miRNA:   3'- -CGCGCUu--CGCAugCUGCU---------CACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 66947 0.7 0.878694
Target:  5'- gGCGCGAcagcugAGCGU-CGACGAccuuaacGUGCucAUCAa -3'
miRNA:   3'- -CGCGCU------UCGCAuGCUGCU-------CACG--UAGU- -5'
6737 3' -52.5 NC_001875.2 + 51775 0.69 0.912896
Target:  5'- cCGCcaaAGGCGUugGGCGAG-GCGUUu -3'
miRNA:   3'- cGCGc--UUCGCAugCUGCUCaCGUAGu -5'
6737 3' -52.5 NC_001875.2 + 3148 0.68 0.929467
Target:  5'- uGCGCGGacgcGGCGUcggGCGGCGAGUaggugagccggcgGCcgCGc -3'
miRNA:   3'- -CGCGCU----UCGCA---UGCUGCUCA-------------CGuaGU- -5'
6737 3' -52.5 NC_001875.2 + 22842 0.74 0.686636
Target:  5'- cCGCGAAGCGUuugcGCGAcCGAGUugauuGCGUCc -3'
miRNA:   3'- cGCGCUUCGCA----UGCU-GCUCA-----CGUAGu -5'
6737 3' -52.5 NC_001875.2 + 119440 0.71 0.823018
Target:  5'- cGCGCGGcaaacAGCGgcccgACGACGAGcgGCAcCGu -3'
miRNA:   3'- -CGCGCU-----UCGCa----UGCUGCUCa-CGUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.