miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 3' -52.5 NC_001875.2 + 118836 1.12 0.003801
Target:  5'- cGCGCGAAGCGUACGACGAGUGCAUCAa -3'
miRNA:   3'- -CGCGCUUCGCAUGCUGCUCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 42492 0.78 0.433175
Target:  5'- cCGaCGAAGCcaACGACGAGUGCAUUg -3'
miRNA:   3'- cGC-GCUUCGcaUGCUGCUCACGUAGu -5'
6737 3' -52.5 NC_001875.2 + 105158 0.76 0.540475
Target:  5'- cGCGCGGcgcGUGUugGGCGAagucaucauGUGCAUCAc -3'
miRNA:   3'- -CGCGCUu--CGCAugCUGCU---------CACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 22842 0.74 0.686636
Target:  5'- cCGCGAAGCGUuugcGCGAcCGAGUugauuGCGUCc -3'
miRNA:   3'- cGCGCUUCGCA----UGCU-GCUCA-----CGUAGu -5'
6737 3' -52.5 NC_001875.2 + 12673 0.73 0.707325
Target:  5'- cGCGCGccGCGUugGcCGGGUGUggCGg -3'
miRNA:   3'- -CGCGCuuCGCAugCuGCUCACGuaGU- -5'
6737 3' -52.5 NC_001875.2 + 59251 0.73 0.727744
Target:  5'- aGCGCGAAGCGUACGAgCGcaauuUGCGg-- -3'
miRNA:   3'- -CGCGCUUCGCAUGCU-GCuc---ACGUagu -5'
6737 3' -52.5 NC_001875.2 + 64911 0.72 0.77709
Target:  5'- cGCGCGcaGAGCG-ACGACGAcauuGUGCGcCAu -3'
miRNA:   3'- -CGCGC--UUCGCaUGCUGCU----CACGUaGU- -5'
6737 3' -52.5 NC_001875.2 + 120283 0.71 0.805134
Target:  5'- aGCGCGAugaagcGCGUGCGAUGcaacaaGGUGCG-CAc -3'
miRNA:   3'- -CGCGCUu-----CGCAUGCUGC------UCACGUaGU- -5'
6737 3' -52.5 NC_001875.2 + 114647 0.71 0.805134
Target:  5'- uCGCGAacGGCGUGugcuauuuuUGGCG-GUGCGUCAg -3'
miRNA:   3'- cGCGCU--UCGCAU---------GCUGCuCACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 119440 0.71 0.823018
Target:  5'- cGCGCGGcaaacAGCGgcccgACGACGAGcgGCAcCGu -3'
miRNA:   3'- -CGCGCU-----UCGCa----UGCUGCUCa-CGUaGU- -5'
6737 3' -52.5 NC_001875.2 + 47969 0.71 0.823018
Target:  5'- aGCGaCGAGGaacCGUGCGAgCGGG-GCGUCGa -3'
miRNA:   3'- -CGC-GCUUC---GCAUGCU-GCUCaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 72567 0.71 0.831689
Target:  5'- gGCGCGGGcGCGgGCGcuGCGGGUGCGg-- -3'
miRNA:   3'- -CGCGCUU-CGCaUGC--UGCUCACGUagu -5'
6737 3' -52.5 NC_001875.2 + 89960 0.7 0.847629
Target:  5'- gGCGCGGcgacaGGUGUugGACGAGcaguuguUGCAgcUCGc -3'
miRNA:   3'- -CGCGCU-----UCGCAugCUGCUC-------ACGU--AGU- -5'
6737 3' -52.5 NC_001875.2 + 4612 0.7 0.864378
Target:  5'- cGCGCucaaacacGGUGUACGGCGAaaGCGUCAg -3'
miRNA:   3'- -CGCGcu------UCGCAUGCUGCUcaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 54358 0.7 0.872015
Target:  5'- cGCGCccGgcGCGUugGGCGAGcGCAc-- -3'
miRNA:   3'- -CGCG--CuuCGCAugCUGCUCaCGUagu -5'
6737 3' -52.5 NC_001875.2 + 66947 0.7 0.878694
Target:  5'- gGCGCGAcagcugAGCGU-CGACGAccuuaacGUGCucAUCAa -3'
miRNA:   3'- -CGCGCU------UCGCAuGCUGCU-------CACG--UAGU- -5'
6737 3' -52.5 NC_001875.2 + 39168 0.7 0.879425
Target:  5'- cCGCGAGGCGggcCGGCGGuUGCGUg- -3'
miRNA:   3'- cGCGCUUCGCau-GCUGCUcACGUAgu -5'
6737 3' -52.5 NC_001875.2 + 58768 0.7 0.879425
Target:  5'- cGCGCGuGGCcaACGACGAcGUGCGc-- -3'
miRNA:   3'- -CGCGCuUCGcaUGCUGCU-CACGUagu -5'
6737 3' -52.5 NC_001875.2 + 65769 0.69 0.886602
Target:  5'- cGUGCGcGGCGgGCGGCG-GcGCGUCGu -3'
miRNA:   3'- -CGCGCuUCGCaUGCUGCuCaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 93427 0.69 0.893541
Target:  5'- ---aGAGGCGcugcACGGCGAGUGCuUCAu -3'
miRNA:   3'- cgcgCUUCGCa---UGCUGCUCACGuAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.