miRNA display CGI


Results 61 - 80 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 5' -66.2 NC_001875.2 + 3223 0.67 0.400761
Target:  5'- gAUGGCGUGGGcGCgUugGCGuuGuuGg -3'
miRNA:   3'- gUGCCGCGCCU-CGgGugCGCggCggC- -5'
6737 5' -66.2 NC_001875.2 + 19942 0.67 0.395965
Target:  5'- aCACGGaGCGGccggcgcgacgguccGGCCgGCGCcUCGCCGu -3'
miRNA:   3'- -GUGCCgCGCC---------------UCGGgUGCGcGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 68117 0.67 0.39279
Target:  5'- -cCGGCGaaGcGCCCGC-CGUCGCCGc -3'
miRNA:   3'- guGCCGCgcCuCGGGUGcGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 100673 0.67 0.391998
Target:  5'- aGCGGCGCGuuAGCacacuguccgacuCCGCGCGCgGCgCGu -3'
miRNA:   3'- gUGCCGCGCc-UCG-------------GGUGCGCGgCG-GC- -5'
6737 5' -66.2 NC_001875.2 + 37354 0.67 0.384922
Target:  5'- gCGCGGcCGCGc-GCUCgugcgaacgcGCGCGCCGCUGc -3'
miRNA:   3'- -GUGCC-GCGCcuCGGG----------UGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 48835 0.67 0.384922
Target:  5'- cUACGGCGCcGcuucaAGCCCGCcggcgacgagcgGCGCCGCg- -3'
miRNA:   3'- -GUGCCGCGcC-----UCGGGUG------------CGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 39637 0.67 0.384922
Target:  5'- aAUGGCGCGcAGCgaaCCGCGCGCgaguuuggGCCGg -3'
miRNA:   3'- gUGCCGCGCcUCG---GGUGCGCGg-------CGGC- -5'
6737 5' -66.2 NC_001875.2 + 7567 0.67 0.384922
Target:  5'- gGCGGCGgGucGUCgacgaccaACGCGCCGCCu -3'
miRNA:   3'- gUGCCGCgCcuCGGg-------UGCGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 83412 0.67 0.384922
Target:  5'- cCAUGGCGCcgcaaaaCUGCGCGCUGCCGu -3'
miRNA:   3'- -GUGCCGCGccucg--GGUGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 7278 0.67 0.384922
Target:  5'- aACGGUGUGccGCCaaaGCGacccCGCCGCCGa -3'
miRNA:   3'- gUGCCGCGCcuCGGg--UGC----GCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 94732 0.67 0.384142
Target:  5'- -cCGGCGCGGcGCcgcgcccgcacacCCACGCGgcggugucguCCGCCa -3'
miRNA:   3'- guGCCGCGCCuCG-------------GGUGCGC----------GGCGGc -5'
6737 5' -66.2 NC_001875.2 + 108988 0.67 0.384142
Target:  5'- gCACGGUGUccaggcuGGAcGCgUACGUcguGCCGCCGa -3'
miRNA:   3'- -GUGCCGCG-------CCU-CGgGUGCG---CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 31240 0.67 0.37716
Target:  5'- aGCGGcCGCGGccggcgcccGGCCCGCGUaCgCGUCGa -3'
miRNA:   3'- gUGCC-GCGCC---------UCGGGUGCGcG-GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 109875 0.67 0.37716
Target:  5'- aGCuGGCGCuGGcgccGCCCAucccCGCGCCGCa- -3'
miRNA:   3'- gUG-CCGCG-CCu---CGGGU----GCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 1721 0.67 0.37716
Target:  5'- uGCgGGCGCGacaCCgGuCGCGCCGCCGc -3'
miRNA:   3'- gUG-CCGCGCcucGGgU-GCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 31197 0.67 0.37716
Target:  5'- -uUGGUG-GGGGCUgACGCGCaCGCUGc -3'
miRNA:   3'- guGCCGCgCCUCGGgUGCGCG-GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 100907 0.67 0.369504
Target:  5'- cCGCaGcGCGCGGAG---ACGCGUCGCCGc -3'
miRNA:   3'- -GUG-C-CGCGCCUCgggUGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 91006 0.67 0.369504
Target:  5'- gGCGaGCGCcGucuuGCCCACG-GCCgGCCGg -3'
miRNA:   3'- gUGC-CGCGcCu---CGGGUGCgCGG-CGGC- -5'
6737 5' -66.2 NC_001875.2 + 39812 0.67 0.369504
Target:  5'- cCGCGGCGU--GGCCCuucgcaaaguACGCaaacGCCGCCa -3'
miRNA:   3'- -GUGCCGCGccUCGGG----------UGCG----CGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 65772 0.67 0.369504
Target:  5'- gCGCGGCG-GGcGgCgGCGCGUCGUCGu -3'
miRNA:   3'- -GUGCCGCgCCuCgGgUGCGCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.