miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 5' -66.2 NC_001875.2 + 110659 0.66 0.417008
Target:  5'- uGCGaGCG-GGAGCauuggcuugaCCA-GCGCCGCCa -3'
miRNA:   3'- gUGC-CGCgCCUCG----------GGUgCGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 5516 0.66 0.417008
Target:  5'- gCAC-GCGCGcAGUUUACGCcgGCCGCCGu -3'
miRNA:   3'- -GUGcCGCGCcUCGGGUGCG--CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 99926 0.66 0.417008
Target:  5'- cCGCGcGCGCGGuGCa---GCGCgGCCa -3'
miRNA:   3'- -GUGC-CGCGCCuCGggugCGCGgCGGc -5'
6737 5' -66.2 NC_001875.2 + 108029 0.66 0.417008
Target:  5'- aCACGGCGC---GCCCGa-CGCCGCgGa -3'
miRNA:   3'- -GUGCCGCGccuCGGGUgcGCGGCGgC- -5'
6737 5' -66.2 NC_001875.2 + 69911 0.66 0.417008
Target:  5'- aCGCGGCGCGcuaaauuGUUCGCGUuuCCGCCGu -3'
miRNA:   3'- -GUGCCGCGCcu-----CGGGUGCGc-GGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 18212 0.66 0.417008
Target:  5'- aCGCGGCGcCGucGCcgcucuugccgCCGCGgccCGCCGCCGa -3'
miRNA:   3'- -GUGCCGC-GCcuCG-----------GGUGC---GCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 95353 0.66 0.417008
Target:  5'- gGCGGCGCac-GUgCACGCGUCGgCGg -3'
miRNA:   3'- gUGCCGCGccuCGgGUGCGCGGCgGC- -5'
6737 5' -66.2 NC_001875.2 + 111879 0.66 0.417008
Target:  5'- aACGGCGaGGcGCCggccggaccgUGCGCGCCgGCCGc -3'
miRNA:   3'- gUGCCGCgCCuCGG----------GUGCGCGG-CGGC- -5'
6737 5' -66.2 NC_001875.2 + 64824 0.66 0.417008
Target:  5'- uGCGGCuGCGcuugcgcuuGAGCCCGauUGUGUCGCUGc -3'
miRNA:   3'- gUGCCG-CGC---------CUCGGGU--GCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 97902 0.66 0.417008
Target:  5'- uGCgGGCGuCGGcGCCgACGC-CCGCUGc -3'
miRNA:   3'- gUG-CCGC-GCCuCGGgUGCGcGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 100268 0.66 0.416186
Target:  5'- gGCGGCGCGcaaggaagccgccGGGCCCaaccugcaGCGCGUgcaaguggUGCCGu -3'
miRNA:   3'- gUGCCGCGC-------------CUCGGG--------UGCGCG--------GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 105529 0.66 0.414545
Target:  5'- aCACGGCucgucgcgaaauugGCGuGAcGCCCACGgGCguguuugaCGCCGu -3'
miRNA:   3'- -GUGCCG--------------CGC-CU-CGGGUGCgCG--------GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 79490 0.66 0.408834
Target:  5'- aCGCuGGCGCGG----CACGCGCCGCa- -3'
miRNA:   3'- -GUG-CCGCGCCucggGUGCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 90696 0.66 0.408834
Target:  5'- gACGaUGgGGuuGCCgGCGCgGCCGCCGg -3'
miRNA:   3'- gUGCcGCgCCu-CGGgUGCG-CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 3155 0.66 0.406401
Target:  5'- aCGCGGCGuCGGgcggcgaguaggugAGCCgGCG-GCCGCg- -3'
miRNA:   3'- -GUGCCGC-GCC--------------UCGGgUGCgCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 66026 0.67 0.403978
Target:  5'- cCACGagcGCGUGGAGUacauuccgcucaagCUggcgcucaacgacgACGCGCCGCCGc -3'
miRNA:   3'- -GUGC---CGCGCCUCG--------------GG--------------UGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 128664 0.67 0.400761
Target:  5'- uCugGuGCGCGGccgccGGCUCACcuacuCGCCGCCc -3'
miRNA:   3'- -GugC-CGCGCC-----UCGGGUGc----GCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 93935 0.67 0.400761
Target:  5'- aCACGaCGCGGuGCcagugCCGCGCcagcaaGCCGCUGg -3'
miRNA:   3'- -GUGCcGCGCCuCG-----GGUGCG------CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 118422 0.67 0.400761
Target:  5'- aACGGgGCGuuuuguuuuaacGGGCCCgugcaaGCGCGCCugguGCCGu -3'
miRNA:   3'- gUGCCgCGC------------CUCGGG------UGCGCGG----CGGC- -5'
6737 5' -66.2 NC_001875.2 + 3223 0.67 0.400761
Target:  5'- gAUGGCGUGGGcGCgUugGCGuuGuuGg -3'
miRNA:   3'- gUGCCGCGCCU-CGgGugCGCggCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.