miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 5' -66.2 NC_001875.2 + 38567 0.66 0.442115
Target:  5'- -uCGGCGCGGcguGCCCauccugcucuacACGgGCCaGCUGc -3'
miRNA:   3'- guGCCGCGCCu--CGGG------------UGCgCGG-CGGC- -5'
6737 5' -66.2 NC_001875.2 + 12287 0.66 0.442115
Target:  5'- cCACcGUGUGcAGCCgGCaCGCCGCCGu -3'
miRNA:   3'- -GUGcCGCGCcUCGGgUGcGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 112829 0.66 0.442115
Target:  5'- gCACGugcaaaGCGCGuugcGGCCUGCGCGCacuGCCGu -3'
miRNA:   3'- -GUGC------CGCGCc---UCGGGUGCGCGg--CGGC- -5'
6737 5' -66.2 NC_001875.2 + 21146 0.66 0.442115
Target:  5'- cCACGaaCGCGGcGCCCucCGCGgCCGCUu -3'
miRNA:   3'- -GUGCc-GCGCCuCGGGu-GCGC-GGCGGc -5'
6737 5' -66.2 NC_001875.2 + 82198 0.66 0.442115
Target:  5'- --gGGCGcCGGcGGCCgCuCGUGUCGCCGc -3'
miRNA:   3'- gugCCGC-GCC-UCGG-GuGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 2672 0.66 0.442115
Target:  5'- gGCGGCGCcuGGGGCaacUGCGgCGCCu -3'
miRNA:   3'- gUGCCGCG--CCUCGgguGCGCgGCGGc -5'
6737 5' -66.2 NC_001875.2 + 30946 0.66 0.442115
Target:  5'- gCACaGGUcucGCcauGGcGCCCACGCGCgCGCUGc -3'
miRNA:   3'- -GUG-CCG---CG---CCuCGGGUGCGCG-GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 127385 0.66 0.440415
Target:  5'- gACGGCGCucaGAGCCUggccaaagugcugGCGgcgcgcgucagcaUGCCGCCGu -3'
miRNA:   3'- gUGCCGCGc--CUCGGG-------------UGC-------------GCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 59090 0.66 0.43365
Target:  5'- aCACGcGCGuUGGAGCgCACcuuGgGCCGCUa -3'
miRNA:   3'- -GUGC-CGC-GCCUCGgGUG---CgCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 95399 0.66 0.43365
Target:  5'- aGCGGCcUGGAcuuuaagcaccaGCCCGacacCGCGgCGCCGg -3'
miRNA:   3'- gUGCCGcGCCU------------CGGGU----GCGCgGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 112196 0.66 0.43365
Target:  5'- cCAgGGCaucguUGGGGUCUACGCGCUGCa- -3'
miRNA:   3'- -GUgCCGc----GCCUCGGGUGCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 124725 0.66 0.43365
Target:  5'- aGCGGCGCGuGgcggucaaugucGGCagCGCGCGCUGCa- -3'
miRNA:   3'- gUGCCGCGC-C------------UCGg-GUGCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 42508 0.66 0.43365
Target:  5'- cCGCGuGCGCcGcaaagcugaGGCCCGuCGUGCCGCuCGa -3'
miRNA:   3'- -GUGC-CGCGcC---------UCGGGU-GCGCGGCG-GC- -5'
6737 5' -66.2 NC_001875.2 + 108667 0.66 0.43365
Target:  5'- aACGGC-CGu-GCCCGCa-GCCGCCGu -3'
miRNA:   3'- gUGCCGcGCcuCGGGUGcgCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 108837 0.66 0.42528
Target:  5'- aCACGGUGCGc-GCCCaaaACGCGCagaucuuggcggCGCUGg -3'
miRNA:   3'- -GUGCCGCGCcuCGGG---UGCGCG------------GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 32823 0.66 0.42528
Target:  5'- aACGGCGCcgcuugcGAGCguggcaccaaaaCCugGUGCCGuCCGg -3'
miRNA:   3'- gUGCCGCGc------CUCG------------GGugCGCGGC-GGC- -5'
6737 5' -66.2 NC_001875.2 + 119411 0.66 0.42528
Target:  5'- cCGCGGCGCGcacgcaacGGCCUgcuugGCGCGCgGCa- -3'
miRNA:   3'- -GUGCCGCGCc-------UCGGG-----UGCGCGgCGgc -5'
6737 5' -66.2 NC_001875.2 + 66677 0.66 0.42528
Target:  5'- aACGGCaGCGGGaugggaauGCUgCACGUGaCCGCCu -3'
miRNA:   3'- gUGCCG-CGCCU--------CGG-GUGCGC-GGCGGc -5'
6737 5' -66.2 NC_001875.2 + 23866 0.66 0.42528
Target:  5'- aGCGGaCGUGcAGCCguugCugGUGUCGCCGa -3'
miRNA:   3'- gUGCC-GCGCcUCGG----GugCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 10864 0.66 0.424449
Target:  5'- gACGaCGCGGuGgCCGCgucggugGCGCUGCCGc -3'
miRNA:   3'- gUGCcGCGCCuCgGGUG-------CGCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.