Results 21 - 40 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6737 | 5' | -66.2 | NC_001875.2 | + | 99926 | 0.66 | 0.417008 |
Target: 5'- cCGCGcGCGCGGuGCa---GCGCgGCCa -3' miRNA: 3'- -GUGC-CGCGCCuCGggugCGCGgCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 98616 | 0.66 | 0.454121 |
Target: 5'- gCGCGccaCGuCGGAGCCCGCGUGUUuuuuccccggcgaggGCCGc -3' miRNA: 3'- -GUGCc--GC-GCCUCGGGUGCGCGG---------------CGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 69911 | 0.66 | 0.417008 |
Target: 5'- aCGCGGCGCGcuaaauuGUUCGCGUuuCCGCCGu -3' miRNA: 3'- -GUGCCGCGCcu-----CGGGUGCGc-GGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 108029 | 0.66 | 0.417008 |
Target: 5'- aCACGGCGC---GCCCGa-CGCCGCgGa -3' miRNA: 3'- -GUGCCGCGccuCGGGUgcGCGGCGgC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 5516 | 0.66 | 0.417008 |
Target: 5'- gCAC-GCGCGcAGUUUACGCcgGCCGCCGu -3' miRNA: 3'- -GUGcCGCGCcUCGGGUGCG--CGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 61510 | 0.66 | 0.45932 |
Target: 5'- -uCGGCGCcGcAGUCCGCGUGCuCGCg- -3' miRNA: 3'- guGCCGCGcC-UCGGGUGCGCG-GCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 97902 | 0.66 | 0.417008 |
Target: 5'- uGCgGGCGuCGGcGCCgACGC-CCGCUGc -3' miRNA: 3'- gUG-CCGC-GCCuCGGgUGCGcGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 50035 | 0.66 | 0.442115 |
Target: 5'- gGCGGCGaGGcGGCCgGCcCGUCGCUGu -3' miRNA: 3'- gUGCCGCgCC-UCGGgUGcGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 23866 | 0.66 | 0.42528 |
Target: 5'- aGCGGaCGUGcAGCCguugCugGUGUCGCCGa -3' miRNA: 3'- gUGCC-GCGCcUCGG----GugCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 77044 | 0.66 | 0.450673 |
Target: 5'- cCGCGuCGCGGuGCUa--GUGCCGCCc -3' miRNA: 3'- -GUGCcGCGCCuCGGgugCGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 77640 | 0.66 | 0.454121 |
Target: 5'- gACGGCcugcacgugugucugGUGGAcGCCaaCGCaGCGCCGCUGu -3' miRNA: 3'- gUGCCG---------------CGCCU-CGG--GUG-CGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 90696 | 0.66 | 0.408834 |
Target: 5'- gACGaUGgGGuuGCCgGCGCgGCCGCCGg -3' miRNA: 3'- gUGCcGCgCCu-CGGgUGCG-CGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 59090 | 0.66 | 0.43365 |
Target: 5'- aCACGcGCGuUGGAGCgCACcuuGgGCCGCUa -3' miRNA: 3'- -GUGC-CGC-GCCUCGgGUG---CgCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 18212 | 0.66 | 0.417008 |
Target: 5'- aCGCGGCGcCGucGCcgcucuugccgCCGCGgccCGCCGCCGa -3' miRNA: 3'- -GUGCCGC-GCcuCG-----------GGUGC---GCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 79490 | 0.66 | 0.408834 |
Target: 5'- aCGCuGGCGCGG----CACGCGCCGCa- -3' miRNA: 3'- -GUG-CCGCGCCucggGUGCGCGGCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 110659 | 0.66 | 0.417008 |
Target: 5'- uGCGaGCG-GGAGCauuggcuugaCCA-GCGCCGCCa -3' miRNA: 3'- gUGC-CGCgCCUCG----------GGUgCGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 3155 | 0.66 | 0.406401 |
Target: 5'- aCGCGGCGuCGGgcggcgaguaggugAGCCgGCG-GCCGCg- -3' miRNA: 3'- -GUGCCGC-GCC--------------UCGGgUGCgCGGCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 119411 | 0.66 | 0.42528 |
Target: 5'- cCGCGGCGCGcacgcaacGGCCUgcuugGCGCGCgGCa- -3' miRNA: 3'- -GUGCCGCGCc-------UCGGG-----UGCGCGgCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 111879 | 0.66 | 0.417008 |
Target: 5'- aACGGCGaGGcGCCggccggaccgUGCGCGCCgGCCGc -3' miRNA: 3'- gUGCCGCgCCuCGG----------GUGCGCGG-CGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 10864 | 0.66 | 0.424449 |
Target: 5'- gACGaCGCGGuGgCCGCgucggugGCGCUGCCGc -3' miRNA: 3'- gUGCcGCGCCuCgGGUG-------CGCGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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