miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 5' -66.2 NC_001875.2 + 23866 0.66 0.42528
Target:  5'- aGCGGaCGUGcAGCCguugCugGUGUCGCCGa -3'
miRNA:   3'- gUGCC-GCGCcUCGG----GugCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 38567 0.66 0.442115
Target:  5'- -uCGGCGCGGcguGCCCauccugcucuacACGgGCCaGCUGc -3'
miRNA:   3'- guGCCGCGCCu--CGGG------------UGCgCGG-CGGC- -5'
6737 5' -66.2 NC_001875.2 + 95353 0.66 0.417008
Target:  5'- gGCGGCGCac-GUgCACGCGUCGgCGg -3'
miRNA:   3'- gUGCCGCGccuCGgGUGCGCGGCgGC- -5'
6737 5' -66.2 NC_001875.2 + 111879 0.66 0.417008
Target:  5'- aACGGCGaGGcGCCggccggaccgUGCGCGCCgGCCGc -3'
miRNA:   3'- gUGCCGCgCCuCGG----------GUGCGCGG-CGGC- -5'
6737 5' -66.2 NC_001875.2 + 10864 0.66 0.424449
Target:  5'- gACGaCGCGGuGgCCGCgucggugGCGCUGCCGc -3'
miRNA:   3'- gUGCcGCGCCuCgGGUG-------CGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 50035 0.66 0.442115
Target:  5'- gGCGGCGaGGcGGCCgGCcCGUCGCUGu -3'
miRNA:   3'- gUGCCGCgCC-UCGGgUGcGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 79490 0.66 0.408834
Target:  5'- aCGCuGGCGCGG----CACGCGCCGCa- -3'
miRNA:   3'- -GUG-CCGCGCCucggGUGCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 46009 0.66 0.45932
Target:  5'- aGCaGGauCGGccGCCCACGCagcugGCCGCCGc -3'
miRNA:   3'- gUG-CCgcGCCu-CGGGUGCG-----CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 108667 0.66 0.43365
Target:  5'- aACGGC-CGu-GCCCGCa-GCCGCCGu -3'
miRNA:   3'- gUGCCGcGCcuCGGGUGcgCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 32823 0.66 0.42528
Target:  5'- aACGGCGCcgcuugcGAGCguggcaccaaaaCCugGUGCCGuCCGg -3'
miRNA:   3'- gUGCCGCGc------CUCG------------GGugCGCGGC-GGC- -5'
6737 5' -66.2 NC_001875.2 + 12287 0.66 0.442115
Target:  5'- cCACcGUGUGcAGCCgGCaCGCCGCCGu -3'
miRNA:   3'- -GUGcCGCGCcUCGGgUGcGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 90696 0.66 0.408834
Target:  5'- gACGaUGgGGuuGCCgGCGCgGCCGCCGg -3'
miRNA:   3'- gUGCcGCgCCu-CGGgUGCG-CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 97902 0.66 0.417008
Target:  5'- uGCgGGCGuCGGcGCCgACGC-CCGCUGc -3'
miRNA:   3'- gUG-CCGC-GCCuCGGgUGCGcGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 37045 0.66 0.442115
Target:  5'- gCACGGCGCGu-GCaCGCGCGCggacgcggccaCGCUGu -3'
miRNA:   3'- -GUGCCGCGCcuCGgGUGCGCG-----------GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 64824 0.66 0.417008
Target:  5'- uGCGGCuGCGcuugcgcuuGAGCCCGauUGUGUCGCUGc -3'
miRNA:   3'- gUGCCG-CGC---------CUCGGGU--GCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 42508 0.66 0.43365
Target:  5'- cCGCGuGCGCcGcaaagcugaGGCCCGuCGUGCCGCuCGa -3'
miRNA:   3'- -GUGC-CGCGcC---------UCGGGU-GCGCGGCG-GC- -5'
6737 5' -66.2 NC_001875.2 + 30946 0.66 0.442115
Target:  5'- gCACaGGUcucGCcauGGcGCCCACGCGCgCGCUGc -3'
miRNA:   3'- -GUG-CCG---CG---CCuCGGGUGCGCG-GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 100268 0.66 0.416186
Target:  5'- gGCGGCGCGcaaggaagccgccGGGCCCaaccugcaGCGCGUgcaaguggUGCCGu -3'
miRNA:   3'- gUGCCGCGC-------------CUCGGG--------UGCGCG--------GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 49854 0.66 0.442115
Target:  5'- ---uGCGCGccGGCCgGCGCGCCuuGCCGg -3'
miRNA:   3'- gugcCGCGCc-UCGGgUGCGCGG--CGGC- -5'
6737 5' -66.2 NC_001875.2 + 108837 0.66 0.42528
Target:  5'- aCACGGUGCGc-GCCCaaaACGCGCagaucuuggcggCGCUGg -3'
miRNA:   3'- -GUGCCGCGCcuCGGG---UGCGCG------------GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.