miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 5' -66.2 NC_001875.2 + 60 0.68 0.347182
Target:  5'- gGCGGCgGCGGcGaacgacaCCaaugACGCGCCGCCc -3'
miRNA:   3'- gUGCCG-CGCCuCg------GG----UGCGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 257 0.68 0.318947
Target:  5'- gCGCGGCGgGGucguuGUauugCugGCGUCGCCGc -3'
miRNA:   3'- -GUGCCGCgCCu----CGg---GugCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 1721 0.67 0.37716
Target:  5'- uGCgGGCGCGacaCCgGuCGCGCCGCCGc -3'
miRNA:   3'- gUG-CCGCGCcucGGgU-GCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 2672 0.66 0.442115
Target:  5'- gGCGGCGCcuGGGGCaacUGCGgCGCCu -3'
miRNA:   3'- gUGCCGCG--CCUCGgguGCGCgGCGGc -5'
6737 5' -66.2 NC_001875.2 + 3070 0.7 0.239243
Target:  5'- aGCGGCGCgccGGGgucGCCCACGgCGUgcacgCGCCGg -3'
miRNA:   3'- gUGCCGCG---CCU---CGGGUGC-GCG-----GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 3155 0.66 0.406401
Target:  5'- aCGCGGCGuCGGgcggcgaguaggugAGCCgGCG-GCCGCg- -3'
miRNA:   3'- -GUGCCGC-GCC--------------UCGGgUGCgCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 3223 0.67 0.400761
Target:  5'- gAUGGCGUGGGcGCgUugGCGuuGuuGg -3'
miRNA:   3'- gUGCCGCGCCU-CGgGugCGCggCggC- -5'
6737 5' -66.2 NC_001875.2 + 3841 0.66 0.450673
Target:  5'- -cCGGCGCGGccgcAGCCUccaacaugugACGauCCGCCGc -3'
miRNA:   3'- guGCCGCGCC----UCGGG----------UGCgcGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 4424 0.7 0.228572
Target:  5'- gCACGGCGgcauGCUgaCGCGCGCCGCCa -3'
miRNA:   3'- -GUGCCGCgccuCGG--GUGCGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 5516 0.66 0.417008
Target:  5'- gCAC-GCGCGcAGUUUACGCcgGCCGCCGu -3'
miRNA:   3'- -GUGcCGCGCcUCGGGUGCG--CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 6482 0.73 0.156638
Target:  5'- uUACGGCGCccaacgcGGAGUgCCGCGCcaacacgcugGCCGCCGu -3'
miRNA:   3'- -GUGCCGCG-------CCUCG-GGUGCG----------CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 7018 0.69 0.27989
Target:  5'- gGCGGCGCGuaucuGaCCUuuaGCGCCGCCa -3'
miRNA:   3'- gUGCCGCGCcu---C-GGGug-CGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 7278 0.67 0.384922
Target:  5'- aACGGUGUGccGCCaaaGCGacccCGCCGCCGa -3'
miRNA:   3'- gUGCCGCGCcuCGGg--UGC----GCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 7567 0.67 0.384922
Target:  5'- gGCGGCGgGucGUCgacgaccaACGCGCCGCCu -3'
miRNA:   3'- gUGCCGCgCcuCGGg-------UGCGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 10158 0.69 0.283619
Target:  5'- gCGCGGCGUGGuGGCCgACGagaccaccgucaCCGCCGa -3'
miRNA:   3'- -GUGCCGCGCC-UCGGgUGCgc----------GGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 10456 0.68 0.318947
Target:  5'- aCGCGGCGCGGcGGCgCGCucagugaaugGCGCUuGCUGa -3'
miRNA:   3'- -GUGCCGCGCC-UCGgGUG----------CGCGG-CGGC- -5'
6737 5' -66.2 NC_001875.2 + 10659 0.69 0.27989
Target:  5'- cUugGGCgGCGGAcugcacuugGCgCAgGCGCUGCCGc -3'
miRNA:   3'- -GugCCG-CGCCU---------CGgGUgCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 10864 0.66 0.424449
Target:  5'- gACGaCGCGGuGgCCGCgucggugGCGCUGCCGc -3'
miRNA:   3'- gUGCcGCGCCuCgGGUG-------CGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 11002 0.67 0.400761
Target:  5'- uGCaGGCGCGcGuGCCCAUgguGUGCCuGCCc -3'
miRNA:   3'- gUG-CCGCGC-CuCGGGUG---CGCGG-CGGc -5'
6737 5' -66.2 NC_001875.2 + 11077 0.7 0.261832
Target:  5'- -uUGGCGUGGcgcgcGCCCugGacacgGCCGCCGu -3'
miRNA:   3'- guGCCGCGCCu----CGGGugCg----CGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.