miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 5' -66.2 NC_001875.2 + 131769 0.68 0.332845
Target:  5'- gGCGGCGCGucauuGGUgucguucgCCGC-CGCCGCCGa -3'
miRNA:   3'- gUGCCGCGCc----UCG--------GGUGcGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 129166 0.69 0.286126
Target:  5'- --aGGCGCcgcaguuGcCCCAgGCGCCGCCGg -3'
miRNA:   3'- gugCCGCGccu----C-GGGUgCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 128765 0.69 0.267744
Target:  5'- gCACGcCGUGGGcGaCCCcgGCGCGCCGCUGc -3'
miRNA:   3'- -GUGCcGCGCCU-C-GGG--UGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 128664 0.67 0.400761
Target:  5'- uCugGuGCGCGGccgccGGCUCACcuacuCGCCGCCc -3'
miRNA:   3'- -GugC-CGCGCC-----UCGGGUGc----GCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 127975 0.69 0.305489
Target:  5'- gGCGGCGCGGugcugccguGCCaCACGaaccuGCUGCUGc -3'
miRNA:   3'- gUGCCGCGCCu--------CGG-GUGCg----CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 127385 0.66 0.440415
Target:  5'- gACGGCGCucaGAGCCUggccaaagugcugGCGgcgcgcgucagcaUGCCGCCGu -3'
miRNA:   3'- gUGCCGCGc--CUCGGG-------------UGC-------------GCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 126027 0.67 0.361955
Target:  5'- gGCGGCGCuGGcAGUCUACuaccuuauGCGCaGCCGg -3'
miRNA:   3'- gUGCCGCG-CC-UCGGGUG--------CGCGgCGGC- -5'
6737 5' -66.2 NC_001875.2 + 124817 0.74 0.142596
Target:  5'- gGCGGCGCuaaaGGUCagaUACGCGCCGCCGg -3'
miRNA:   3'- gUGCCGCGcc--UCGG---GUGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 124725 0.66 0.43365
Target:  5'- aGCGGCGCGuGgcggucaaugucGGCagCGCGCGCUGCa- -3'
miRNA:   3'- gUGCCGCGC-C------------UCGg-GUGCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 122791 0.71 0.203648
Target:  5'- -cCGGCGCGGAaaCCG-GCGCgGCCGg -3'
miRNA:   3'- guGCCGCGCCUcgGGUgCGCGgCGGC- -5'
6737 5' -66.2 NC_001875.2 + 122716 0.66 0.45932
Target:  5'- -cUGGCGCGcGAGUCCACgGCGuCCGaguuCGu -3'
miRNA:   3'- guGCCGCGC-CUCGGGUG-CGC-GGCg---GC- -5'
6737 5' -66.2 NC_001875.2 + 122132 0.69 0.267744
Target:  5'- --gGGCGCGGcgcGGCCgGCGCGCaCGaCGg -3'
miRNA:   3'- gugCCGCGCC---UCGGgUGCGCG-GCgGC- -5'
6737 5' -66.2 NC_001875.2 + 121900 0.66 0.448096
Target:  5'- -cCGGCGUGGgcagcaccGcuagaauacuugcgGCCCGCGCGCCaGUCGc -3'
miRNA:   3'- guGCCGCGCC--------U--------------CGGGUGCGCGG-CGGC- -5'
6737 5' -66.2 NC_001875.2 + 120959 0.67 0.361955
Target:  5'- aCACGuuGCGCGGcAGCgCCAcCGaCGCgGCCa -3'
miRNA:   3'- -GUGC--CGCGCC-UCG-GGU-GC-GCGgCGGc -5'
6737 5' -66.2 NC_001875.2 + 120743 0.71 0.213323
Target:  5'- uGCGGCGCcgagacGGGGCCguguccagggCGCGCGCCacGCCa -3'
miRNA:   3'- gUGCCGCG------CCUCGG----------GUGCGCGG--CGGc -5'
6737 5' -66.2 NC_001875.2 + 119411 0.66 0.42528
Target:  5'- cCGCGGCGCGcacgcaacGGCCUgcuugGCGCGCgGCa- -3'
miRNA:   3'- -GUGCCGCGCc-------UCGGG-----UGCGCGgCGgc -5'
6737 5' -66.2 NC_001875.2 + 118993 0.7 0.250327
Target:  5'- cCACGGCuGCGuGcuAGCCg--GCGCCGCCGg -3'
miRNA:   3'- -GUGCCG-CGC-C--UCGGgugCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 118870 1.06 0.000515
Target:  5'- cCACGGCGCGGAGCCCACGCGCCGCCGc -3'
miRNA:   3'- -GUGCCGCGCCUCGGGUGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 118422 0.67 0.400761
Target:  5'- aACGGgGCGuuuuguuuuaacGGGCCCgugcaaGCGCGCCugguGCCGu -3'
miRNA:   3'- gUGCCgCGC------------CUCGGG------UGCGCGG----CGGC- -5'
6737 5' -66.2 NC_001875.2 + 117924 0.7 0.261832
Target:  5'- gACGGCaagcuGCaGGccGGCgUGCGCGCCGCCGc -3'
miRNA:   3'- gUGCCG-----CG-CC--UCGgGUGCGCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.