miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 5' -66.2 NC_001875.2 + 118870 1.06 0.000515
Target:  5'- cCACGGCGCGGAGCCCACGCGCCGCCGc -3'
miRNA:   3'- -GUGCCGCGCCUCGGGUGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 98804 0.82 0.034961
Target:  5'- gCGCGGCGCGGcGCCCGcCGCGCUGCg- -3'
miRNA:   3'- -GUGCCGCGCCuCGGGU-GCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 31689 0.81 0.041833
Target:  5'- -cCGGCGUGGAccgccGCUUGCGCGCCGCCGg -3'
miRNA:   3'- guGCCGCGCCU-----CGGGUGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 74150 0.8 0.046336
Target:  5'- gAgGGCGCGGcGCCCGC-CGCCGCCa -3'
miRNA:   3'- gUgCCGCGCCuCGGGUGcGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 40371 0.79 0.053852
Target:  5'- -cCGGCGCcaggaaaucgguGGAcaugcgcGCCCACGCGCCGCCGc -3'
miRNA:   3'- guGCCGCG------------CCU-------CGGGUGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 33669 0.78 0.071321
Target:  5'- gGCGGCGUGGuaaaacaaacGGCCCGacgUGCGCCGCCc -3'
miRNA:   3'- gUGCCGCGCC----------UCGGGU---GCGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 99054 0.76 0.0963
Target:  5'- -cCGGCGCGGcGCCCGCccaCGCCGCgCGa -3'
miRNA:   3'- guGCCGCGCCuCGGGUGc--GCGGCG-GC- -5'
6737 5' -66.2 NC_001875.2 + 65791 0.75 0.103735
Target:  5'- gCGCGGCgucggcgcGCGGuGCCUGCGCGgCGCCa -3'
miRNA:   3'- -GUGCCG--------CGCCuCGGGUGCGCgGCGGc -5'
6737 5' -66.2 NC_001875.2 + 102011 0.75 0.104766
Target:  5'- gGCGGCgGUGGAcugcagcgugccguuGaCCCAUGCGCCGCCa -3'
miRNA:   3'- gUGCCG-CGCCU---------------C-GGGUGCGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 51196 0.75 0.106331
Target:  5'- gACGGCGCGGu--UCugGCGCCGCCc -3'
miRNA:   3'- gUGCCGCGCCucgGGugCGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 70203 0.75 0.106331
Target:  5'- gACGGCGaccacuGGGcGCCCGagGCGCCGCCGa -3'
miRNA:   3'- gUGCCGCg-----CCU-CGGGUg-CGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 81343 0.75 0.117338
Target:  5'- gCGCGGCGCgcuGGuGCCgcgcgCACGCGCCgGCCGc -3'
miRNA:   3'- -GUGCCGCG---CCuCGG-----GUGCGCGG-CGGC- -5'
6737 5' -66.2 NC_001875.2 + 56447 0.75 0.120251
Target:  5'- aCACGGUgaggccggugGCGGGGUCCGCGCGCguguuggucagCGCCa -3'
miRNA:   3'- -GUGCCG----------CGCCUCGGGUGCGCG-----------GCGGc -5'
6737 5' -66.2 NC_001875.2 + 21556 0.74 0.123231
Target:  5'- -uCGGCGaCGGggcAGCCCGCGCGCUccgcggccaGCCGg -3'
miRNA:   3'- guGCCGC-GCC---UCGGGUGCGCGG---------CGGC- -5'
6737 5' -66.2 NC_001875.2 + 88235 0.74 0.123231
Target:  5'- aACGGCGCa-AGCggCGCGCGCCGCCGc -3'
miRNA:   3'- gUGCCGCGccUCGg-GUGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 108566 0.74 0.12628
Target:  5'- uUACGGCGCGGcGGUgCugGCGCUGCg- -3'
miRNA:   3'- -GUGCCGCGCC-UCGgGugCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 98617 0.74 0.129399
Target:  5'- aACGGCGCccggcGAGCCCGCGC-CCGCg- -3'
miRNA:   3'- gUGCCGCGc----CUCGGGUGCGcGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 50493 0.74 0.13585
Target:  5'- gCGCGuGCGCGcGGCaCCAgCGCGCCGCgCGg -3'
miRNA:   3'- -GUGC-CGCGCcUCG-GGU-GCGCGGCG-GC- -5'
6737 5' -66.2 NC_001875.2 + 49996 0.74 0.13585
Target:  5'- aCGCGGCGCuugucgcgguuGGGGCgCGCGUGgUCGCCGg -3'
miRNA:   3'- -GUGCCGCG-----------CCUCGgGUGCGC-GGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 110273 0.74 0.142596
Target:  5'- gGCuGGcCGCGGAGCgCGCGgGCUGCCc -3'
miRNA:   3'- gUG-CC-GCGCCUCGgGUGCgCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.